Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1559185 . T A CCDS13019.1:NM_006065.3:c.232Atc>Ttc_NP_006056.2:p.78I>F Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 87.81 0.0 X-RAY
 2009-07-21 ILE A:49 A:49 20.0 0.114 E -105.0 -29.8 20.0 0.114 0.0 HOH
 7.037
 CD1
 O
2jju 1 O00241 100.0 3e-82 X-RAY
 2008-08-05 ILE A:49 A:49 19.0 0.109 E -100.2 -34.7 19.0 0.109 0.0 HOH
 2.793
 O
 O
ILE B:49 B:49 20.0 0.114 E -105.0 -32.0 NA NA NA
4cmm 1 P78324 89.92 9e-74 X-RAY
 2014-02-26 ILE A:49 A:49 31.0 0.177 E -106.6 -35.4 31.0 0.177 0.0 HOH
 2.725
 O
 O
2jjv 1 Q5TFQ8 89.92 1e-73 X-RAY
 2008-08-05 ILE A:49 A:49 16.0 0.091 E -108.5 -35.6 16.0 0.091 0.0 SO4
HOH
 5.769
2.956
 N
O
 O1
O
ILE B:49 B:49 20.0 0.114 E -106.0 -32.9 NA NA NA
6nmr 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ILE C:49 S:49 20.0 0.114 E -92.7 -42.5 20.0 0.114 0.0 HOH
 6.297
 N
 O
ILE F:49 E:49 21.0 NA E -64.7 -40.1 NA NA NA
ILE I:49 I:49 26.0 0.149 E -84.4 -41.5 NA NA NA
ILE L:49 M:49 29.0 0.166 E -95.6 -40.3 NA NA NA
6nms 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ILE C:49 S:49 19.0 0.109 E -98.8 -35.0 19.0 0.109 0.0 HOH
 2.655
 O
 O
ILE F:49 C:49 19.0 0.109 E -101.4 -33.6 NA NA NA
6nmt 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ILE C:49 C:49 17.0 0.097 E -107.8 -33.1 17.0 0.097 0.0 HOH
 2.623
 O
 O
6nmu 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ILE C:49 S:49 31.0 0.177 E -105.1 -42.1 5.0 0.029 0.148 B:None:0.149
 HOH
 2.650
 O
 O
ILE F:49 C:49 31.0 0.177 E -97.4 -43.1 NA NA NA
6nmv 1 P78324 89.08 1e-72 X-RAY
 2019-08-07 ILE A:49 S:49 26.0 0.149 E -105.5 -39.8 26.0 0.149 0.0 HOH
 8.726
 O
 O
6bit 3 P78324 89.74 3e-72 X-RAY
 2017-12-06 ILE C:49 H:49 18.0 0.103 E -101.2 -37.9 18.0 0.103 0.0 HOH
 2.754
 O
 O
ILE F:49 G:49 18.0 0.103 E -91.6 -36.2 NA NA NA
7kpg 3 P78324 89.57 4e-70 X-RAY
 2020-12-16 ILE C:47 S:49 17.0 0.097 E -111.6 -34.8 17.0 0.097 0.0 HOH
 2.661
 O
 O
2jjs 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 ILE A:49 A:49 20.0 0.114 E -104.3 -34.5 20.0 0.114 0.0 NAG
IOD
IOD
HOH
 9.092
8.751
9.420
2.777
 O
C
CG1
O
 O4
I
I
O
ILE B:49 B:49 17.0 0.097 E -106.0 -36.8 NA NA NA
2jjt 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 ILE A:49 A:49 10.0 0.057 E -99.7 -42.5 10.0 0.057 0.0 HOH
 8.705
 CG1
 O
ILE B:49 B:49 12.0 0.069 E -100.9 -41.6 NA NA NA
2uv3 1 P78324 88.24 2e-69 X-RAY
 2007-03-27 ILE A:49 A:49 15.0 0.086 E -96.9 -36.3 15.0 0.086 0.0 HOH
 2.809
 O
 O
ILE B:49 B:49 13.0 0.074 E -102.1 -36.2 13.0 0.074 0.0 HOH
 2.827
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 100.0 0.0 ILE A:78 A:78 21.0 0.12 E -98.9 -36.8
af-p78324-f1 1 P78324 86.98 0.0 ILE A:79 A:79 22.0 0.126 E -98.7 -36.0