Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1559202 . C A CCDS13019.1:NM_006065.3:c.215gGa>gTa_NP_006056.2:p.72G>V Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 87.81 0.0 X-RAY
 2009-07-21 GLY A:43 A:43 55.0 0.733 S 49.7 -130.1 55.0 0.733 0.0 HOH
 5.655
 N
 O
2jju 1 O00241 100.0 3e-82 X-RAY
 2008-08-05 GLY A:43 A:43 46.0 0.613 S -78.2 -179.8 46.0 0.613 0.0 HOH
 2.826
 O
 O
GLY B:43 B:43 47.0 0.627 S -83.4 177.1 NA NA NA
4cmm 1 P78324 89.92 9e-74 X-RAY
 2014-02-26 GLY A:43 A:43 47.0 0.627 S 91.3 -159.1 47.0 0.627 0.0 HOH
 4.817
 O
 O
2jjv 1 Q5TFQ8 89.92 1e-73 X-RAY
 2008-08-05 GLY A:43 A:43 37.0 0.493 S -80.5 173.8 37.0 0.493 0.0 SO4
HOH
 9.741
2.914
 O
O
 O1
O
GLY B:43 B:43 39.0 0.52 S 84.4 179.2 NA NA NA
6nmr 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 GLY C:43 S:43 39.0 0.52 S -92.0 -173.6 39.0 0.52 0.0 HOH
 9.102
 O
 O
GLY F:43 E:43 47.0 0.627 S -91.3 144.8 NA NA NA
GLY I:43 I:43 45.0 0.6 S -128.2 -123.8 NA NA NA
GLY L:43 M:43 38.0 0.507 S -95.4 -171.0 NA NA NA
6nms 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 GLY C:43 S:43 42.0 0.56 S 93.3 -170.0 21.0 0.28 0.28 A:None:0.28
 HOH
 4.988
 O
 O
GLY F:43 C:43 45.0 0.6 S 94.2 -170.0 NA NA NA
6nmt 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 GLY C:43 C:43 40.0 0.533 S -66.1 177.9 40.0 0.533 0.0 HOH
 4.122
 O
 O
6nmu 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 GLY C:43 S:43 42.0 0.56 S -80.1 -158.7 42.0 0.56 0.0 HOH
 3.240
 CA
 O
GLY F:43 C:43 38.0 0.507 S -71.3 -169.8 NA NA NA
6nmv 1 P78324 89.08 1e-72 X-RAY
 2019-08-07 GLY A:43 S:43 42.0 0.56 S 85.2 176.9 0.0 0.0 0.56 B:None:0.333
C:None:0.347
 HOH
 5.588
 N
 O
6bit 3 P78324 89.74 3e-72 X-RAY
 2017-12-06 GLY C:43 H:43 40.0 0.533 S 90.5 -170.2 40.0 0.533 0.0 HOH
 4.703
 N
 O
GLY F:43 G:43 36.0 0.48 S 104.9 178.4 NA NA NA
7kpg 3 P78324 89.57 4e-70 X-RAY
 2020-12-16 GLY C:41 S:43 42.0 0.56 S -85.4 -167.1 42.0 0.56 0.0 HOH
 2.908
 N
 O
2jjs 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 GLY A:43 A:43 40.0 0.533 S 81.8 -177.7 40.0 0.533 0.0 IOD
HOH
 9.269
2.888
 N
N
 I
O
GLY B:43 B:43 41.0 0.547 S 79.4 -174.0 NA NA NA
2jjt 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 GLY A:43 A:43 43.0 0.573 S -72.4 -169.5 43.0 0.573 0.0 HOH
 5.428
 N
 O
GLY B:43 B:43 39.0 0.52 S 91.4 173.4 NA NA NA
2uv3 1 P78324 88.24 2e-69 X-RAY
 2007-03-27 GLY A:43 A:43 34.0 0.453 S -94.9 -179.9 34.0 0.453 0.0 HOH
 4.977
 N
 O
GLY B:43 B:43 36.0 0.48 S -97.4 -169.2 36.0 0.48 0.0 HOH
 3.477
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 100.0 0.0 GLY A:72 A:72 51.0 0.68 G 71.5 -156.7
af-p78324-f1 1 P78324 86.98 0.0 GLY A:73 A:73 42.0 0.56 S 74.6 -164.2