Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592048 . G A CCDS46571.1:NM_001135844.2:c.388Cac>Tac_NP_001129316.1:p.130H>Y Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 ASN E:101 E:101 56.0 0.35 -91.7 140.4 56.0 0.35 0.0 HOH
 3.029
 O
 O
ASN F:101 F:101 51.0 0.319 E -76.1 131.0 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 HIS A:101 A:101 88.0 0.451 -59.0 141.2 88.0 0.451 0.0 HOH
 3.700
 O
 O
HIS B:101 B:101 60.0 0.308 -61.0 147.2 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 ASP A:101 A:101 51.0 0.34 -73.2 147.9 37.0 0.247 0.093 B:Q08722:0.093
 HOH
 2.712
 OD2
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:101 S:101 57.0 0.38 -55.7 165.8 57.0 0.38 0.0 HOH
 2.497
 OD1
 O
ASP F:101 E:101 44.0 0.293 -53.6 152.3 NA NA NA
ASP I:101 I:101 53.0 0.353 -59.8 131.2 NA NA NA
ASP L:101 M:101 66.0 0.44 -59.2 172.4 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:101 S:101 34.0 0.227 -67.3 144.1 34.0 0.227 0.0 HOH
 6.484
 O
 O
ASP F:101 C:101 50.0 0.333 -65.7 148.8 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:101 C:101 41.0 0.273 -63.9 141.6 41.0 0.273 0.0 HOH
 2.983
 OD1
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:101 S:101 42.0 0.28 -59.9 135.7 42.0 0.28 0.0 HOH
 3.152
 OD2
 O
ASP F:101 C:101 48.0 0.32 -60.9 135.9 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP A:101 S:101 24.0 0.16 65.5 88.5 24.0 0.16 0.0
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 ASP C:101 H:101 42.0 0.28 -63.4 142.7 21.0 0.14 0.14 A:None:0.14
 HOH
 2.831
 OD1
 O
ASP F:101 G:101 41.0 0.273 -61.8 143.0 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 ASP A:101 A:101 56.0 0.373 -71.2 152.8 56.0 0.373 0.0 HOH
 2.538
 OD2
 O
ASP B:101 B:101 41.0 0.273 -72.7 144.8 NA NA NA
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 ASP C:99 S:101 49.0 0.327 -67.0 147.3 36.0 0.24 0.087 B:None:0.087
 HOH
 2.665
 OD1
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 ASN A:101 A:101 115.0 0.719 360.0 151.6 115.0 0.719 0.0 HOH
 3.083
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 ASP A:130 A:130 43.0 0.287 -68.9 140.9
af-p78324-f1 1 P78324 96.73 0.0 ASP A:131 A:131 38.0 0.253 -71.7 140.0