Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592051 . C A CCDS46571.1:NM_001135844.2:c.385Gac>Tac_NP_001129316.1:p.129D>Y Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 ASP A:100 A:100 66.0 0.44 -72.3 128.7 66.0 0.44 0.0
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 GLU E:100 E:100 152.0 0.8 S -79.1 165.7 152.0 0.8 0.0 HOH
 3.816
 CG
 O
GLU F:100 F:100 151.0 0.795 S -156.2 173.9 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 ASP A:100 A:100 110.0 0.733 S -124.9 172.6 110.0 0.733 0.0 HOH
 2.655
 OD2
 O
ASP B:100 B:100 118.0 0.787 S -99.1 167.3 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 ASP A:100 A:100 118.0 0.787 -138.8 145.4 116.0 0.773 0.014 B:Q08722:0.013
 HOH
 2.717
 O
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:100 S:100 119.0 0.793 S 118.3 152.3 119.0 0.793 0.0 HOH
 4.064
 C
 O
ASP F:100 E:100 131.0 0.873 S 34.7 155.6 NA NA NA
ASP I:100 I:100 111.0 0.74 S -154.5 139.1 NA NA NA
ASP L:100 M:100 141.0 0.94 S 67.5 139.6 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:100 S:100 128.0 0.853 S -108.0 161.4 128.0 0.853 0.0 HOH
 8.984
 CB
 O
ASP F:100 C:100 128.0 0.853 S -111.8 163.7 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:100 C:100 104.0 0.693 S -156.0 176.9 104.0 0.693 0.0 HOH
 2.518
 OD1
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:100 S:100 122.0 0.813 S -150.7 160.6 108.0 0.72 0.093 B:None:0.093
 HOH
 4.065
 CA
 O
ASP F:100 C:100 128.0 0.853 S -152.4 153.6 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP A:100 S:100 82.0 0.547 105.4 140.3 82.0 0.547 0.0
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 ASP C:100 H:100 98.0 0.653 S -123.0 -162.2 37.0 0.247 0.406 B:None:0.253
A:None:0.173
 HOH
 3.020
 OD1
 O
ASP F:100 G:100 94.0 0.627 S -146.0 -169.2 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 ASP A:100 A:100 116.0 0.773 S -117.7 150.1 116.0 0.773 0.0 HOH
 2.910
 OD1
 O
ASP B:100 B:100 175.0 1.0 360.0 143.6 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 ASP A:100 A:100 50.0 0.333 -62.3 148.6 38.0 0.253 0.08 C:Q08722:0.08
 HOH
 2.477
 OD2
 O
ASP B:100 B:100 53.0 0.353 -66.4 147.9 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 ASP A:100 A:100 53.0 0.353 -58.9 154.0 43.0 0.287 0.066 C:Q08722:0.067
 HOH
 3.776
 OD2
 O
ASP B:100 B:100 55.0 0.367 -61.4 155.3 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 ASP A:100 A:100 49.0 0.327 -60.5 145.3 49.0 0.327 0.0 HOH
 2.577
 O
 O
ASP B:100 B:100 40.0 0.267 -63.4 140.3 40.0 0.267 0.0 HOH
 2.655
 OD2
 O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 ASP C:98 S:100 130.0 0.867 S -126.6 155.5 130.0 0.867 0.0 HOH
 3.900
 C
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 GLU A:100 NA:NA DO NA DO DO DO NA NA NA
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 ASP B:104 B:100 39.0 0.26 -61.2 141.7 28.0 0.187 0.073 A:Q08722:0.073
 HOH
 2.552
 OD2
 O
ASP D:104 D:100 37.0 0.247 -56.4 145.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 ASP A:129 A:129 124.0 0.827 S -112.1 145.1
af-p78324-f1 1 P78324 96.73 0.0 ASP A:130 A:130 122.0 0.813 S -116.8 149.2