Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592102 . G A CCDS46571.1:NM_001135844.2:c.334Cca>Tca_NP_001129316.1:p.112P>S Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 PRO A:83 A:83 28.0 0.193 G -53.0 -31.9 28.0 0.193 0.0 HOH
 4.780
 O
 O
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 PRO E:83 E:83 77.0 0.531 G -57.8 -21.3 77.0 0.531 0.0 HOH
 7.340
 CG
 O
PRO F:83 F:83 81.0 0.559 G -52.4 -27.4 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 PRO A:83 A:83 94.0 0.648 G -52.9 -26.5 94.0 0.648 0.0 HOH
 2.746
 O
 O
PRO B:83 B:83 98.0 0.676 G -50.7 -31.7 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 PRO A:83 A:83 97.0 0.669 G -59.8 -23.5 97.0 0.669 0.0 HOH
 2.834
 O
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:83 S:83 92.0 0.634 G -57.3 -24.2 92.0 0.634 0.0
PRO F:83 E:83 111.0 0.766 G -61.0 -24.6 NA NA NA
PRO I:83 I:83 72.0 0.497 G -59.0 -23.3 NA NA NA
PRO L:83 M:83 90.0 0.621 G -58.5 -22.6 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:83 S:83 70.0 0.483 G -57.1 -20.7 70.0 0.483 0.0 HOH
 3.605
 CD
 O
PRO F:83 C:83 93.0 0.641 G -57.6 -22.1 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:83 C:83 92.0 0.634 G -57.1 -30.1 92.0 0.634 0.0 HOH
 5.185
 O
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:83 S:83 99.0 0.683 G -55.3 -33.5 53.0 0.366 0.317 A:None:0.317
 HOH
 3.398
 O
 O
PRO F:83 C:83 97.0 0.669 G -56.8 -33.1 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO A:83 S:83 84.0 0.579 G -43.6 -42.1 84.0 0.579 0.0 HOH
 6.632
 O
 O
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 PRO C:83 H:83 71.0 0.49 G -56.3 -25.1 71.0 0.49 0.0 HOH
 3.655
 CG
 O
PRO F:83 G:83 73.0 0.503 G -55.9 -24.2 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 PRO A:83 A:83 80.0 0.552 G -50.2 -33.5 80.0 0.552 0.0 HOH
 2.981
 O
 O
PRO B:83 B:83 98.0 0.676 G -51.0 -29.1 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 PRO A:83 A:83 84.0 0.579 G -51.4 -29.8 84.0 0.579 0.0 IOD
HOH
 9.813
3.115
 O
O
 I
O
PRO B:83 B:83 90.0 0.621 G -51.8 -32.4 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 PRO A:83 A:83 100.0 0.69 G -51.8 -24.7 100.0 0.69 0.0
PRO B:83 B:83 90.0 0.621 G -51.2 -26.3 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 PRO A:83 A:83 91.0 0.628 G -54.7 -27.8 91.0 0.628 0.0 HOH
 2.765
 O
 O
PRO B:83 B:83 89.0 0.614 G -55.5 -21.5 89.0 0.614 0.0 HOH
 2.973
 O
 O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 PRO C:81 S:83 75.0 0.517 G -48.8 -22.8 75.0 0.517 0.0 HOH
 5.443
 O
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 PRO A:83 A:83 85.0 0.586 G -56.1 -22.9 85.0 0.586 0.0 HOH
 7.107
 CG
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 PRO B:87 B:83 101.0 0.697 G -53.0 -25.2 101.0 0.697 0.0 HOH
 5.972
 C
 O
PRO D:87 D:83 100.0 0.69 G -51.7 -32.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 PRO A:112 A:112 30.0 0.207 G -54.4 -33.8
af-p78324-f1 1 P78324 96.73 0.0 PRO A:113 A:113 23.0 0.159 G -56.3 -33.4