Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592152 . A C CCDS46571.1:NM_001135844.2:c.284cTc>cGc_NP_001129316.1:p.95L>R Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 SER A:66 NA:NA DO NA DO DO DO NA NA NA
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 LEU E:66 E:66 15.0 0.088 T -60.6 -33.8 15.0 0.088 0.0 HOH
 2.731
 N
 O
LEU F:66 F:66 17.0 0.1 T -70.6 -19.3 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 LEU A:66 A:66 34.0 0.2 S -78.1 -28.0 34.0 0.2 0.0 HOH
 3.862
 CD2
 O
LEU B:66 B:66 36.0 0.212 T -70.9 -10.3 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 LEU A:66 A:66 19.0 0.112 T -74.1 -4.9 3.0 0.018 0.094 B:Q08722:0.094
 HOH
 3.027
 N
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 LEU C:66 S:66 142.0 0.835 T -76.1 161.2 128.0 0.753 0.082 B:None:0.076
A:None:0.006
 HOH
 3.050
 CB
 O
LEU F:66 E:66 136.0 0.8 T -52.3 -10.5 NA NA NA
LEU I:66 I:66 147.0 0.865 S -68.9 165.5 NA NA NA
LEU L:66 M:66 161.0 0.947 S -101.6 121.6 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 LEU C:66 S:66 24.0 0.141 T -75.7 -23.5 24.0 0.141 0.0 HOH
 3.850
 CB
 O
LEU F:66 C:66 21.0 0.124 T -75.1 -24.9 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 LEU C:66 C:66 24.0 0.141 T -74.2 -14.7 24.0 0.141 0.0 HOH
 2.650
 O
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 LEU C:66 S:66 14.0 0.082 S -80.2 -18.8 14.0 0.082 0.0 HOH
 3.663
 O
 O
LEU F:66 C:66 21.0 0.124 S -76.7 -20.7 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 LEU A:66 S:66 39.0 0.229 S -81.2 -24.3 39.0 0.229 0.0 HOH
 6.491
 CD1
 O
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 LEU C:66 H:66 25.0 0.147 T -72.7 -13.5 25.0 0.147 0.0 HOH
 3.471
 CD1
 O
LEU F:66 G:66 25.0 0.147 T -71.4 -19.5 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 LEU A:66 NA:NA DO NA DO DO DO NA NA NA
LEU B:66 B:66 22.0 0.129 T -70.1 -22.1 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 SER A:66 A:66 20.0 0.174 T -82.0 3.4 3.0 0.026 0.148 C:Q08722:0.148
 HOH
 2.741
 O
 O
SER B:66 B:66 18.0 0.157 T -86.0 2.4 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 SER A:66 A:66 21.0 0.183 T -80.5 -3.3 3.0 0.026 0.157 C:Q08722:0.157
 HOH
 2.996
 O
 O
SER B:66 B:66 22.0 0.191 T -81.2 -3.9 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 SER A:66 A:66 36.0 0.313 S -155.9 168.0 15.0 0.13 0.183 B:P78324:0.183
 SO4
SO4
HOH
 3.366
6.880
2.678
 CA
OG
OG
 O1
O4
O
SER B:66 B:66 50.0 0.435 -64.1 134.4 19.0 0.165 0.27 A:P78324:0.27
 SO4
HOH
 9.732
2.589
 N
O
 O2
O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 LEU C:64 S:66 32.0 0.188 T -72.8 -7.1 23.0 0.135 0.053 A:None:0.053
 HOH
 2.792
 N
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 LEU A:66 A:66 23.0 0.135 T -66.8 -16.2 23.0 0.135 0.0 HOH
 2.649
 O
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 THR B:70 B:66 23.0 0.164 T -79.6 1.1 6.0 0.043 0.121 A:Q08722:0.121
 HOH
 2.966
 O
 O
THR D:70 D:66 27.0 0.193 T -81.8 0.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 LEU A:95 A:95 63.0 0.371 T -62.0 -19.3
af-p78324-f1 1 P78324 96.73 0.0 LEU A:96 A:96 57.0 0.335 T -67.1 -13.3