Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592154 . G A CCDS46571.1:NM_001135844.2:c.282gaC>gaT_NP_001129316.1:p.94D>D Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 GLU A:65 NA:NA DO NA DO DO DO NA NA NA
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 ASP E:65 E:65 89.0 0.593 -83.1 96.8 89.0 0.593 0.0 HOH
 3.664
 C
 O
ASP F:65 F:65 85.0 0.567 -73.2 102.0 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 ASP A:65 A:65 78.0 0.52 -88.2 114.1 78.0 0.52 0.0 HOH
 4.874
 N
 O
ASP B:65 B:65 83.0 0.553 -89.9 102.3 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 ASP A:65 A:65 89.0 0.593 -95.2 100.9 89.0 0.593 0.0 HOH
 2.829
 N
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:65 S:65 52.0 NA 71.2 170.7 47.0 NA NA B:None:NA
 HOH
 2.577
 N
 O
ASP F:65 E:65 57.0 NA T -58.5 -27.1 NA NA NA
ASP I:65 I:65 60.0 NA -100.6 -152.0 NA NA NA
ASP L:65 M:65 81.0 0.54 73.4 168.8 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:65 S:65 91.0 0.607 -90.1 109.8 91.0 0.607 0.0 HOH
 3.048
 N
 O
ASP F:65 C:65 100.0 0.667 -92.7 111.6 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:65 C:65 88.0 0.587 -88.5 109.9 88.0 0.587 0.0 HOH
 2.950
 O
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP C:65 S:65 77.0 0.513 -95.3 116.7 77.0 0.513 0.0 HOH
 6.761
 O
 O
ASP F:65 C:65 92.0 0.613 -86.6 116.0 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 ASP A:65 S:65 85.0 0.567 -79.4 117.5 85.0 0.567 0.0
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 ASP C:65 H:65 82.0 0.547 -85.2 107.4 82.0 0.547 0.0 HOH
 5.190
 N
 O
ASP F:65 G:65 95.0 0.633 -78.7 113.1 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 GLU A:65 NA:NA DO NA DO DO DO NA NA NA
GLU B:65 B:65 102.0 0.537 -79.2 114.0 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 GLU A:65 A:65 125.0 0.658 -81.7 83.7 125.0 0.658 0.0 HOH
 2.960
 N
 O
GLU B:65 B:65 108.0 0.568 -79.9 85.1 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 GLU A:65 A:65 43.0 NA -88.8 80.1 43.0 NA NA HOH
 5.388
 O
 O
GLU B:65 B:65 115.0 0.605 -89.1 82.9 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 GLU A:65 A:65 172.0 0.905 63.4 13.7 71.0 0.374 0.531 B:P78324:0.532
 SO4
HOH
 4.268
2.920
 O
O
 O1
O
GLU B:65 B:65 191.0 1.0 -86.0 1.2 115.0 0.605 0.395 A:P78324:0.4
 SO4
SO4
HOH
 4.700
7.431
2.534
 OE1
OE2
O
 O4
O4
O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 ASP C:63 S:65 92.0 0.613 -84.2 104.5 37.0 0.247 0.366 A:None:0.367
 HOH
 3.691
 C
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 ASP A:65 A:65 81.0 0.54 -83.9 102.8 81.0 0.54 0.0 HOH
 2.353
 OD2
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 GLU B:69 B:65 96.0 0.505 -85.9 84.1 96.0 0.505 0.0 HOH
 3.146
 CA
 O
GLU D:69 D:65 116.0 0.611 -85.9 95.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 GLU A:94 A:94 118.0 0.621 -73.6 109.2
af-p78324-f1 1 P78324 96.73 0.0 ASP A:95 A:95 77.0 0.513 -82.0 105.6