Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592208 . T A CCDS46571.1:NM_001135844.2:c.228gaA>gaT_NP_001129316.1:p.76E>D Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 GLU A:47 A:47 92.0 0.484 E -103.5 122.1 92.0 0.484 0.0 HOH
 5.330
 OE2
 O
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 GLU E:47 E:47 96.0 0.505 E -96.2 131.7 96.0 0.505 0.0 HOH
 7.074
 N
 O
GLU F:47 F:47 98.0 0.516 E -88.6 138.1 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 GLU A:47 A:47 105.0 0.553 E -92.6 132.4 105.0 0.553 0.0 SO4
HOH
 3.335
4.930
 CA
N
 O1
O
GLU B:47 B:47 89.0 0.468 E -107.9 126.2 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 GLU A:47 A:47 91.0 0.479 E -103.4 130.1 91.0 0.479 0.0 HOH
 3.552
 CA
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 GLU C:47 S:47 100.0 0.526 E -100.0 124.2 100.0 0.526 0.0 HOH
 2.941
 OE1
 O
GLU F:47 E:47 132.0 0.695 E -72.9 127.7 NA NA NA
GLU I:47 I:47 41.0 NA -84.1 113.4 NA NA NA
GLU L:47 M:47 134.0 0.705 -108.8 122.0 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 GLU C:47 S:47 90.0 0.474 E -88.6 126.1 90.0 0.474 0.0 HOH
 3.878
 CA
 O
GLU F:47 C:47 90.0 0.474 E -88.1 126.3 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 GLU C:47 C:47 87.0 0.458 E -99.3 127.3 87.0 0.458 0.0 HOH
 4.352
 OE1
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 GLU C:47 S:47 118.0 0.621 E -119.7 128.3 14.0 0.074 0.547 B:None:0.526
A:None:0.1
 HOH
 3.130
 OE2
 O
GLU F:47 C:47 122.0 0.642 E -114.0 132.1 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 GLU A:47 S:47 92.0 0.484 E -96.3 147.0 34.0 0.179 0.305 B:None:0.305
 HOH
 7.706
 N
 O
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 GLU C:47 H:47 84.0 0.442 E -93.5 126.7 52.0 0.274 0.168 B:None:0.168
 HOH
 2.646
 OE2
 O
GLU F:47 G:47 90.0 0.474 E -99.8 127.1 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 GLU A:47 A:47 84.0 0.442 E -102.0 126.3 84.0 0.442 0.0 HOH
 2.669
 OE1
 O
GLU B:47 B:47 87.0 0.458 E -103.2 127.8 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 GLU A:47 A:47 91.0 0.479 E -102.4 122.6 91.0 0.479 0.0 IOD
HOH
 8.013
3.532
 OE1
CA
 I
O
GLU B:47 B:47 86.0 0.453 E -104.4 125.9 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 GLU A:47 A:47 99.0 0.521 E -84.2 116.6 99.0 0.521 0.0 HOH
 7.321
 O
 O
GLU B:47 B:47 91.0 0.479 E -100.3 128.9 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 GLU A:47 A:47 91.0 0.479 E -105.2 130.2 91.0 0.479 0.0 HOH
 2.689
 OE2
 O
GLU B:47 B:47 95.0 0.5 E -100.1 127.0 95.0 0.5 0.0 HOH
 2.790
 OE2
 O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 GLU C:45 S:47 96.0 0.505 E -118.0 124.6 96.0 0.505 0.0 HOH
 4.600
 OE2
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 GLU A:47 A:47 92.0 0.484 E -101.1 127.0 92.0 0.484 0.0 HOH
 3.757
 CA
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 VAL B:51 B:47 64.0 0.413 E -107.3 129.4 64.0 0.413 0.0 HOH
 3.859
 CG2
 O
VAL D:51 D:47 56.0 0.361 E -115.1 128.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 GLU A:76 A:76 92.0 0.484 E -97.0 135.6
af-p78324-f1 1 P78324 96.73 0.0 GLU A:77 A:77 94.0 0.495 E -98.5 132.2