Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592255 . G A CCDS46571.1:NM_001135844.2:c.181Cct>Tct_NP_001129316.1:p.61P>S Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 PRO A:32 A:32 42.0 0.29 S -70.7 161.2 42.0 0.29 0.0 HOH
 3.619
 CD
 O
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 PRO E:32 E:32 39.0 0.269 S -62.0 155.5 39.0 0.269 0.0 HOH
 4.097
 O
 O
PRO F:32 F:32 38.0 0.262 S -72.7 160.5 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 PRO A:32 A:32 39.0 0.269 S -72.8 155.4 39.0 0.269 0.0 HOH
 9.843
 N
 O
PRO B:32 B:32 19.0 0.131 S -68.2 153.1 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 PRO A:32 A:32 19.0 0.131 S -71.7 165.5 19.0 0.131 0.0 HOH
 3.289
 CA
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:32 S:32 41.0 0.283 S -60.3 142.2 8.0 0.055 0.228 B:None:0.228
 HOH
 4.339
 CD
 O
PRO F:32 E:32 51.0 0.352 S -59.0 138.9 NA NA NA
PRO I:32 I:32 35.0 0.241 S -56.9 142.8 NA NA NA
PRO L:32 M:32 47.0 0.324 S -59.4 144.7 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:32 S:32 35.0 0.241 S -83.0 161.0 35.0 0.241 0.0
PRO F:32 C:32 28.0 0.193 S -76.9 159.3 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:32 C:32 37.0 0.255 S -75.5 162.6 37.0 0.255 0.0 HOH
 3.360
 CA
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO C:32 S:32 25.0 0.172 S -74.4 157.4 25.0 0.172 0.0 HOH
 4.658
 O
 O
PRO F:32 C:32 18.0 0.124 S -69.5 100.3 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 PRO A:32 S:32 26.0 0.179 S -85.5 154.9 26.0 0.179 0.0
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 PRO C:32 H:32 32.0 0.221 S -81.5 165.4 32.0 0.221 0.0 HOH
 3.367
 CA
 O
PRO F:32 G:32 33.0 0.228 S -78.3 160.5 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 PRO A:32 A:32 34.0 0.234 S -71.2 151.2 34.0 0.234 0.0 CL
HOH
 3.642
3.457
 CA
CD
 CL
O
PRO B:32 B:32 18.0 0.124 S -70.6 157.2 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 PRO A:32 A:32 36.0 0.248 S -66.5 157.3 36.0 0.248 0.0 IOD
IOD
IOD
IOD
HOH
 3.801
7.819
3.780
7.256
4.510
 CB
N
CA
CA
CB
 I
I
I
I
O
PRO B:32 B:32 42.0 0.29 S -66.8 156.7 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 PRO A:32 A:32 33.0 0.228 S -70.3 165.2 33.0 0.228 0.0 HOH
 8.568
 O
 O
PRO B:32 B:32 33.0 0.228 S -70.5 166.2 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 PRO A:32 A:32 15.0 0.103 S -73.2 158.3 15.0 0.103 0.0 MES
HOH
 7.974
3.478
 N
CA
 O1
O
PRO B:32 B:32 22.0 0.152 S -78.4 160.7 22.0 0.152 0.0 MES
HOH
 7.898
3.409
 N
CA
 O1
O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 PRO C:30 S:32 55.0 0.379 S -70.9 156.8 31.0 0.214 0.165 B:None:0.166
 HOH
 3.595
 CD
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 PRO A:32 A:32 44.0 0.303 S -72.0 164.9 44.0 0.303 0.0 HOH
 3.970
 O
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 PRO B:36 B:32 28.0 0.193 S -78.1 177.4 28.0 0.193 0.0 HOH
 3.552
 CB
 O
PRO D:36 D:32 24.0 0.166 S -74.5 174.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 PRO A:61 A:61 28.0 0.193 S -72.9 153.6
af-p78324-f1 1 P78324 96.73 0.0 PRO A:62 A:62 26.0 0.179 S -72.4 146.3