Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592258 . T A CCDS46571.1:NM_001135844.2:c.178Atc>Ttc_NP_001129316.1:p.60I>F Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 ILE A:31 A:31 98.0 0.56 -109.9 151.0 98.0 0.56 0.0 HOH
 2.718
 O
 O
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 LEU E:31 E:31 125.0 0.735 -108.8 150.7 125.0 0.735 0.0 HOH
 4.888
 N
 O
LEU F:31 F:31 113.0 0.665 -101.2 142.2 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 ILE A:31 A:31 111.0 0.634 -122.3 132.3 111.0 0.634 0.0 HOH
 7.484
 N
 O
ILE B:31 B:31 124.0 0.709 -121.1 136.1 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 ILE A:31 A:31 121.0 0.691 -114.0 149.0 104.0 0.594 0.097 B:Q08722:0.097
 NAG
HOH
 9.967
3.021
 CG2
O
 O6
O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ILE C:31 S:31 115.0 0.657 -101.9 137.7 11.0 0.063 0.594 B:None:0.594
 HOH
 4.527
 O
 O
ILE F:31 E:31 127.0 0.726 -104.7 142.8 NA NA NA
ILE I:31 I:31 113.0 0.646 -95.9 138.0 NA NA NA
ILE L:31 M:31 122.0 0.697 -105.4 141.0 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ILE C:31 S:31 116.0 0.663 -112.2 123.3 116.0 0.663 0.0 HOH
 9.527
 O
 O
ILE F:31 C:31 62.0 NA -104.5 137.8 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ILE C:31 C:31 98.0 0.56 -120.3 132.2 98.0 0.56 0.0 HOH
 2.615
 O
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 ILE C:31 S:31 126.0 0.72 -91.9 142.3 126.0 0.72 0.0 HOH
 6.729
 N
 O
ILE F:31 C:31 140.0 0.8 -77.6 -45.8 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 ILE A:31 S:31 105.0 0.6 -119.9 130.5 105.0 0.6 0.0
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 ILE C:31 H:31 112.0 0.64 -111.4 129.8 112.0 0.64 0.0 HOH
 4.685
 O
 O
ILE F:31 G:31 117.0 0.669 -109.9 134.0 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 ILE A:31 A:31 110.0 0.629 -114.4 137.5 110.0 0.629 0.0 CL
HOH
 4.325
2.716
 CG2
O
 CL
O
ILE B:31 B:31 110.0 0.629 -120.6 138.4 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 ILE A:31 A:31 119.0 0.68 -115.8 154.4 100.0 0.571 0.109 C:Q08722:0.109
 IOD
IOD
IOD
IOD
HOH
 6.341
4.611
4.794
4.402
4.478
 C
N
CB
CG2
CG2
 I
I
I
I
O
ILE B:31 B:31 118.0 0.674 -118.4 151.9 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 ILE A:31 A:31 117.0 0.669 -108.7 154.1 99.0 0.566 0.103 C:Q08722:0.103
 HOH
 7.460
 N
 O
ILE B:31 B:31 121.0 0.691 -108.6 155.3 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 ILE A:31 A:31 124.0 0.709 -121.2 132.0 124.0 0.709 0.0 SO4
MES
SO4
HOH
 9.008
3.684
6.745
2.661
 CG1
CD1
CD1
O
 O2
C5
O1
O
ILE B:31 B:31 128.0 0.731 -121.0 130.4 128.0 0.731 0.0 MES
SO4
HOH
 3.968
7.028
2.658
 CD1
CD1
O
 C3
O4
O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 ILE C:29 S:31 122.0 0.697 -111.2 132.1 68.0 0.389 0.308 B:None:0.309
 HOH
 2.975
 O
 O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 LEU A:31 A:31 128.0 0.753 -124.5 143.9 128.0 0.753 0.0 HOH
 3.739
 CD2
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 PHE B:35 B:31 103.0 0.49 -106.7 154.3 72.0 0.343 0.147 A:Q08722:0.148
 NAG
HOH
 8.903
2.799
 CE2
O
 O6
O
PHE D:35 D:31 146.0 0.695 -99.9 154.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 ILE A:60 A:60 125.0 0.714 -95.3 133.3
af-p78324-f1 1 P78324 96.73 0.0 ILE A:61 A:61 127.0 0.726 -96.2 129.5