Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1592312 . T A CCDS46571.1:NM_001135844.2:c.124Ata>Tta_NP_001129316.1:p.42I>L Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 96.25 0.0 X-RAY
 2009-07-21 VAL A:13 A:13 30.0 0.194 E -135.4 138.2 30.0 0.194 0.0 HOH
 3.651
 O
 O
4i2x 3 Q9P1W8 82.3 0.0 X-RAY
 2013-12-18 LEU E:13 E:13 19.0 0.112 E -118.0 128.6 11.0 0.065 0.047 B:None:0.047
 HOH
 3.558
 CD1
 O
LEU F:13 F:13 18.0 0.106 E -126.6 119.4 NA NA NA
2jjv 1 Q5TFQ8 100.0 5e-83 X-RAY
 2008-08-05 ILE A:13 A:13 32.0 0.183 E -137.1 152.1 32.0 0.183 0.0 HOH
 3.869
 CG2
 O
ILE B:13 B:13 29.0 0.166 E -139.1 152.3 NA NA NA
4cmm 1 P78324 94.12 4e-78 X-RAY
 2014-02-26 VAL A:13 A:13 24.0 0.155 E -137.9 126.9 24.0 0.155 0.0 HOH
 3.266
 CG1
 O
6nmr 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 VAL C:13 S:13 37.0 0.239 E -158.1 140.6 37.0 0.239 0.0 HOH
 9.472
 N
 O
VAL F:13 E:13 37.0 0.239 E -130.3 136.3 NA NA NA
VAL I:13 I:13 20.0 0.129 -117.3 144.7 NA NA NA
VAL L:13 M:13 26.0 0.168 E -133.0 135.7 NA NA NA
6nms 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 VAL C:13 S:13 23.0 0.148 E -134.4 130.6 23.0 0.148 0.0 HOH
 6.039
 CG1
 O
VAL F:13 C:13 31.0 0.2 E -134.8 127.5 NA NA NA
6nmt 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 VAL C:13 C:13 27.0 0.174 E -127.6 135.6 26.0 0.168 0.006 A:None:0.006
 HOH
 3.435
 CG1
 O
6nmu 3 P78324 93.28 6e-77 X-RAY
 2019-08-07 VAL C:13 S:13 27.0 0.174 E -134.2 122.2 27.0 0.174 0.0 HOH
 6.389
 C
 O
VAL F:13 C:13 24.0 0.155 E -115.7 146.3 NA NA NA
6nmv 1 P78324 93.28 6e-77 X-RAY
 2019-08-07 VAL A:13 S:13 42.0 0.271 E -143.2 131.5 42.0 0.271 0.0 HOH
 5.353
 CB
 O
6bit 3 P78324 94.02 1e-76 X-RAY
 2017-12-06 VAL C:13 H:13 27.0 0.174 E -148.0 139.6 27.0 0.174 0.0 HOH
 3.068
 O
 O
VAL F:13 G:13 22.0 0.142 E -136.1 126.8 NA NA NA
2jju 1 O00241 89.92 2e-74 X-RAY
 2008-08-05 VAL A:13 A:13 32.0 0.206 E -134.7 128.5 32.0 0.206 0.0 HOH
 3.448
 CG1
 O
VAL B:13 B:13 24.0 0.155 E -133.2 133.1 NA NA NA
2jjs 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 VAL A:13 A:13 27.0 0.174 E -138.5 137.2 27.0 0.174 0.0 HOH
 3.357
 CG2
 O
VAL B:13 B:13 28.0 0.181 E -141.3 136.1 NA NA NA
2jjt 1 P78324 92.44 3e-74 X-RAY
 2008-08-05 VAL A:13 A:13 21.0 0.135 E -122.2 137.7 21.0 0.135 0.0 HOH
 3.782
 CG1
 O
VAL B:13 B:13 19.0 0.123 E -122.7 138.2 NA NA NA
2uv3 1 P78324 92.44 3e-74 X-RAY
 2007-03-27 VAL A:13 A:13 23.0 0.148 E -134.1 134.6 23.0 0.148 0.0 MES
SO4
HOH
 3.613
5.301
3.438
 CG1
N
CG2
 O1S
O1
O
VAL B:13 B:13 25.0 0.161 E -129.9 135.5 25.0 0.161 0.0 MES
SO4
HOH
 3.854
5.210
3.427
 CG1
N
CG2
 O3S
O3
O
7kpg 3 P78324 93.04 5e-74 X-RAY
 2020-12-16 VAL C:11 S:13 23.0 0.148 E -140.0 128.8 23.0 0.148 0.0 SO4
HOH
 9.734
3.254
 CG2
C
 O2
O
2jjw 1 Q9P1W8 81.51 1e-68 X-RAY
 2008-08-05 LEU A:13 A:13 32.0 0.188 E -121.1 128.9 1.0 0.006 0.182 A:Q9P1W8:0.182
 HOH
 3.933
 CD2
 O
4kjy 2 ? 81.3 2e-68 X-RAY
 2013-06-12 VAL B:17 B:13 33.0 0.213 E -132.9 144.8 33.0 0.213 0.0 HOH
 3.560
 CG1
 O
VAL D:17 D:13 30.0 0.194 E -132.3 136.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 87.44 0.0 VAL A:42 A:42 21.0 0.135 E -126.9 138.2
af-p78324-f1 1 P78324 96.73 0.0 VAL A:43 A:43 24.0 0.155 E -128.0 134.2