Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1895835 . C A CCDS13022.1:NM_001040022.1:c.170gCg>gAg_NP_001035111.1:p.57A>E Homo sapiens signal regulatory protein alpha (SIRPA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 95.94 0.0 X-RAY
 2009-07-21 VAL A:27 A:27 7.0 0.045 E -105.3 148.8 7.0 0.045 0.0 HOH
 9.241
 CB
 O
4i2x 3 Q9P1W8 82.19 0.0 X-RAY
 2013-12-18 VAL E:27 E:27 10.0 0.065 E -104.4 152.3 4.0 0.026 0.039 B:None:0.039
 HOH
 4.484
 CG2
 O
VAL F:27 F:27 11.0 0.071 E -126.7 146.0 NA NA NA
4cmm 1 P78324 100.0 6e-82 X-RAY
 2014-02-26 ALA A:27 A:27 5.0 0.043 E -101.1 143.3 5.0 0.043 0.0 HOH
 4.891
 CB
 O
6nmr 3 P78324 99.16 7e-81 X-RAY
 2019-08-07 ALA C:27 S:27 12.0 0.104 E -100.4 152.9 12.0 0.104 0.0 HOH
 7.085
 C
 O
ALA F:27 E:27 10.0 0.087 E -99.3 144.4 NA NA NA
ALA I:27 I:27 4.0 0.035 E -100.4 139.9 NA NA NA
ALA L:27 M:27 8.0 0.07 E -99.6 140.3 NA NA NA
6nms 3 P78324 99.16 7e-81 X-RAY
 2019-08-07 ALA C:27 S:27 3.0 0.026 E -105.0 133.1 3.0 0.026 0.0 HOH
 7.783
 CA
 O
ALA F:27 C:27 1.0 0.009 E -105.6 135.6 NA NA NA
6nmt 3 P78324 99.16 7e-81 X-RAY
 2019-08-07 ALA C:27 C:27 3.0 0.026 E -100.4 138.6 3.0 0.026 0.0 HOH
 3.894
 CB
 O
6nmu 3 P78324 99.16 7e-81 X-RAY
 2019-08-07 ALA C:27 S:27 3.0 0.026 E -89.7 150.5 3.0 0.026 0.0 HOH
 7.029
 CB
 O
ALA F:27 C:27 2.0 0.017 E -107.1 141.9 NA NA NA
6nmv 1 P78324 99.16 7e-81 X-RAY
 2019-08-07 ALA A:27 S:27 8.0 0.07 E -94.6 125.1 8.0 0.07 0.0
6bit 3 P78324 100.0 2e-80 X-RAY
 2017-12-06 ALA C:27 H:27 6.0 0.052 E -95.5 147.5 6.0 0.052 0.0 HOH
 3.962
 CB
 O
ALA F:27 G:27 3.0 0.026 E -93.0 144.3 NA NA NA
7kpg 3 P78324 99.13 7e-78 X-RAY
 2020-12-16 ALA C:25 S:27 9.0 0.078 E -116.4 147.5 9.0 0.078 0.0 HOH
 3.949
 CB
 O
2jjv 1 Q5TFQ8 94.12 1e-76 X-RAY
 2008-08-05 VAL A:27 A:27 9.0 0.058 E -98.9 161.5 9.0 0.058 0.0 HOH
 6.942
 O
 O
VAL B:27 B:27 4.0 0.026 E -105.6 119.6 NA NA NA
2jju 1 O00241 89.92 5e-73 X-RAY
 2008-08-05 MET A:27 A:27 5.0 0.027 E -103.3 149.9 5.0 0.027 0.0 HOH
 3.623
 CG
 O
MET B:27 B:27 5.0 0.027 E -100.5 149.4 NA NA NA
2jjs 1 P78324 89.08 2e-69 X-RAY
 2008-08-05 VAL A:27 A:27 9.0 0.058 E -116.6 153.7 7.0 0.045 0.013 C:Q08722:0.013
 IOD
HOH
 7.750
2.717
 CG2
O
 I
O
VAL B:27 B:27 9.0 0.058 E -116.6 149.7 NA NA NA
2jjt 1 P78324 89.08 2e-69 X-RAY
 2008-08-05 VAL A:27 A:27 6.0 0.039 E -113.4 145.5 4.0 0.026 0.013 C:Q08722:0.013
 HOH
 7.446
 CG2
 O
VAL B:27 B:27 9.0 0.058 E -115.7 144.7 NA NA NA
2uv3 1 P78324 89.08 2e-69 X-RAY
 2007-03-27 VAL A:27 A:27 8.0 0.052 E -115.3 150.0 2.0 0.013 0.039 B:P78324:0.039
 MES
HOH
 7.167
2.790
 O
O
 O1
O
VAL B:27 B:27 8.0 0.052 E -110.4 151.8 2.0 0.013 0.039 A:P78324:0.039
 MES
HOH
 7.349
3.509
 O
CG2
 O1
O
2jjw 1 Q9P1W8 80.67 1e-66 X-RAY
 2008-08-05 VAL A:27 A:27 6.0 0.039 E -102.4 145.0 6.0 0.039 0.0 HOH
 4.232
 CG2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p78324-f1 1 P78324 100.0 0.0 ALA A:57 A:57 4.0 0.035 E -115.2 139.6
af-o00241-f1 1 O00241 86.98 0.0 MET A:56 A:56 7.0 0.038 E -109.8 145.0