Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 1896059 | . | G | A | CCDS13022.1:NM_001040022.1:c.394Gtg>Atg_NP_001035111.1:p.132V>M | Homo sapiens signal regulatory protein alpha (SIRPA), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2wng | 1 | P78324 | 95.94 | 0.0 |
X-RAY |
2009-07-21 | THR | A:101 | A:101 | 68.0 | 0.486 | E | -89.5 | 157.7 | 68.0 | 0.486 | 0.0 | ||||||
4i2x | 3 | Q9P1W8 | 82.19 | 0.0 |
X-RAY |
2013-12-18 | VAL | E:102 | E:102 | 67.0 | 0.432 | E | -106.6 | 140.7 | 67.0 | 0.432 | 0.0 |
HOH |
5.081 |
N |
O |
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VAL | F:102 | F:102 | 68.0 | 0.439 | E | -122.4 | 149.3 | NA | NA | NA | |||||||||||||
4cmm | 1 | P78324 | 100.0 | 6e-82 |
X-RAY |
2014-02-26 | VAL | A:102 | A:102 | 92.0 | 0.594 | E | -114.0 | 126.1 | 92.0 | 0.594 | 0.0 |
HOH |
3.459 |
CA |
O |
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6nmr | 3 | P78324 | 99.16 | 7e-81 |
X-RAY |
2019-08-07 | VAL | C:102 | S:102 | 69.0 | 0.445 | E | -128.1 | 144.6 | 69.0 | 0.445 | 0.0 |
HOH |
6.505 |
N |
O |
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VAL | F:102 | E:102 | 78.0 | 0.503 | E | -132.1 | 151.4 | NA | NA | NA | |||||||||||||
VAL | I:102 | I:102 | 82.0 | 0.529 | E | -102.0 | 138.0 | NA | NA | NA | |||||||||||||
VAL | L:102 | M:102 | 57.0 | NA | E | -149.0 | 140.6 | NA | NA | NA | |||||||||||||
6nms | 3 | P78324 | 99.16 | 7e-81 |
X-RAY |
2019-08-07 | VAL | C:102 | S:102 | 62.0 | 0.4 | E | -125.0 | 144.0 | 62.0 | 0.4 | 0.0 |
HOH |
7.286 |
C |
O |
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VAL | F:102 | C:102 | 72.0 | 0.465 | E | -120.2 | 144.5 | NA | NA | NA | |||||||||||||
6nmt | 3 | P78324 | 99.16 | 7e-81 |
X-RAY |
2019-08-07 | VAL | C:102 | C:102 | 56.0 | 0.361 | E | -121.4 | 145.0 | 56.0 | 0.361 | 0.0 |
HOH |
3.510 |
CG2 |
O |
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6nmu | 3 | P78324 | 99.16 | 7e-81 |
X-RAY |
2019-08-07 | VAL | C:102 | S:102 | 70.0 | 0.452 | E | -123.5 | 128.5 | 70.0 | 0.452 | 0.0 |
HOH |
6.732 |
N |
O |
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VAL | F:102 | C:102 | 79.0 | 0.51 | E | -113.5 | 141.2 | NA | NA | NA | |||||||||||||
6nmv | 1 | P78324 | 99.16 | 7e-81 |
X-RAY |
2019-08-07 | VAL | A:102 | S:102 | 75.0 | 0.484 | E | -105.8 | 152.0 | 32.0 | 0.206 | 0.278 |
C:None:0.277 |
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6bit | 3 | P78324 | 100.0 | 2e-80 |
X-RAY |
2017-12-06 | VAL | C:102 | H:102 | 42.0 | 0.271 | E | -117.6 | 134.2 | 42.0 | 0.271 | 0.0 |
HOH |
3.642 |
CA |
O |
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VAL | F:102 | G:102 | 47.0 | 0.303 | E | -119.6 | 130.8 | NA | NA | NA | |||||||||||||
7kpg | 3 | P78324 | 99.13 | 7e-78 |
X-RAY |
2020-12-16 | VAL | C:100 | S:102 | 56.0 | 0.361 | E | -122.3 | 140.5 | 56.0 | 0.361 | 0.0 |
HOH |
3.511 |
CA |
O |
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2jjv | 1 | Q5TFQ8 | 94.12 | 1e-76 |
X-RAY |
2008-08-05 | VAL | A:102 | A:102 | 91.0 | 0.587 | E | -113.9 | 135.4 | 91.0 | 0.587 | 0.0 |
HOH |
3.606 |
CG1 |
O |
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VAL | B:102 | B:102 | 71.0 | 0.458 | E | -121.1 | 149.6 | NA | NA | NA | |||||||||||||
2jju | 1 | O00241 | 89.92 | 5e-73 |
X-RAY |
2008-08-05 | VAL | A:102 | A:102 | 61.0 | 0.394 | E | -124.7 | 136.7 | 61.0 | 0.394 | 0.0 |
HOH |
3.522 |
CG1 |
O |
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VAL | B:102 | B:102 | 89.0 | 0.574 | E | -132.9 | 150.5 | NA | NA | NA | |||||||||||||
2jjs | 1 | P78324 | 89.08 | 2e-69 |
X-RAY |
2008-08-05 | THR | A:101 | A:101 | 82.0 | 0.586 | E | -121.4 | 143.1 | 82.0 | 0.586 | 0.0 |
IOD HOH |
9.451 2.772 |
OG1 OG1 |
I O |
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THR | B:101 | B:101 | 67.0 | 0.479 | E | -119.1 | 142.9 | NA | NA | NA | |||||||||||||
2jjt | 1 | P78324 | 89.08 | 2e-69 |
X-RAY |
2008-08-05 | THR | A:101 | A:101 | 82.0 | 0.586 | E | -125.8 | 150.6 | 82.0 | 0.586 | 0.0 |
HOH |
8.105 |
N |
O |
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THR | B:101 | B:101 | 81.0 | 0.579 | E | -127.7 | 149.0 | NA | NA | NA | |||||||||||||
2uv3 | 1 | P78324 | 89.08 | 2e-69 |
X-RAY |
2007-03-27 | THR | A:101 | A:101 | 73.0 | 0.521 | E | -128.3 | 154.9 | 73.0 | 0.521 | 0.0 |
HOH |
3.466 |
CG2 |
O |
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THR | B:101 | B:101 | 68.0 | 0.486 | E | -123.3 | 160.4 | 68.0 | 0.486 | 0.0 |
HOH |
3.520 |
CG2 |
O |
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2jjw | 1 | Q9P1W8 | 80.67 | 1e-66 |
X-RAY |
2008-08-05 | VAL | A:102 | A:102 | 91.0 | 0.587 | E | -125.4 | 141.3 | 91.0 | 0.587 | 0.0 |
HOH |
5.001 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p78324-f1 | 1 | P78324 | 100.0 | 0.0 | VAL | A:132 | A:132 | 85.0 | 0.548 | E | -106.8 | 133.1 | |
af-o00241-f1 | 1 | O00241 | 86.98 | 0.0 | VAL | A:131 | A:131 | 80.0 | 0.516 | E | -109.3 | 135.5 |