Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 44750898 | . | G | A | CCDS13393.1:NM_001250.4:c.157Gag>Aag_NP_001241.1:p.53E>K | Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6fax | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2018-02-07 | GLU | C:33 | R:53 | 149.0 | 0.784 | S | -86.3 | -9.8 | 56.0 | 0.295 | 0.489 |
A:None:0.037 B:None:0.489 |
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| 6pe8 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | GLU | E:33 | T:53 | 135.0 | 0.711 | S | -62.9 | -35.1 | NA | NA | NA | ||||||
| GLU | F:33 | U:53 | 141.0 | 0.742 | S | -55.8 | -41.2 | 141.0 | 0.742 | 0.0 | |||||||||||||
| 6pe9 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | GLU | G:33 | G:53 | 182.0 | 0.958 | S | -59.3 | -13.2 | NA | NA | NA | ||||||
| GLU | I:33 | I:53 | 140.0 | 0.737 | S | -55.6 | -28.3 | NA | NA | NA | |||||||||||||
| GLU | J:33 | J:53 | 146.0 | 0.768 | S | -67.9 | -10.1 | NA | NA | NA | |||||||||||||
| GLU | N:33 | U:53 | 147.0 | 0.774 | S | -47.8 | -28.5 | NA | NA | NA | |||||||||||||
| GLU | O:33 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3qd6 | 2 | P25942 | 97.71 | 4e-124 |
X-RAY |
2011-02-02 | GLU | G:33 | R:53 | 164.0 | 0.863 | S | -107.8 | 19.7 | 164.0 | 0.863 | 0.0 | ||||||
| GLU | H:33 | S:53 | 143.0 | 0.753 | S | -43.2 | -59.3 | 143.0 | 0.753 | 0.0 | |||||||||||||
| GLU | I:33 | T:53 | 141.0 | 0.742 | T | -44.7 | -56.6 | NA | NA | NA | |||||||||||||
| GLU | J:33 | U:53 | 147.0 | 0.774 | S | -87.7 | -11.7 | NA | NA | NA | |||||||||||||
| 5dmi | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLU | A:31 | A:53 | 54.0 | NA | T | -51.6 | -30.0 | 54.0 | NA | NA | ||||||
| 5dmj | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLU | A:31 | A:53 | 67.0 | NA | S | -58.8 | -34.5 | 67.0 | NA | NA | ||||||
| GLU | C:31 | D:53 | 137.0 | 0.721 | S | -62.3 | -30.9 | NA | NA | NA | |||||||||||||
| GLU | E:31 | F:53 | 90.0 | NA | S | -60.1 | -34.2 | NA | NA | NA | |||||||||||||
| 5ihl | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLU | A:31 | A:53 | 136.0 | 0.716 | S | -76.9 | -19.4 | 136.0 | 0.716 | 0.0 | ||||||
| GLU | C:31 | D:53 | 129.0 | 0.679 | S | -78.6 | -18.4 | NA | NA | NA | |||||||||||||
| GLU | E:31 | F:53 | 139.0 | 0.732 | S | -75.9 | -20.0 | NA | NA | NA | |||||||||||||
| GLU | G:31 | H:53 | 124.0 | 0.653 | S | -79.1 | -18.7 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p25942-f1 | 1 | P25942 | 100.0 | 0.0 | GLU | A:53 | A:53 | 147.0 | 0.774 | S | -54.0 | -27.6 | |