Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 44750988 . T A CCDS13393.1:NM_001250.4:c.247Tgc>Agc_NP_001241.1:p.83C>S Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fax 3 P25942 100.0 3e-126 X-RAY
 2018-02-07 CYS C:63 R:83 18.0 0.133 -97.5 106.5 18.0 0.133 0.0 HOH
 8.524
 N
 O
6pe8 3 P25942 100.0 3e-126 X-RAY
 2019-08-14 CYS E:63 T:83 9.0 0.067 -88.4 88.2 NA NA NA
CYS F:63 U:83 8.0 0.059 -91.6 103.1 0.0 0.0 0.059 A:None:0.059
 HOH
 7.844
 N
 O
6pe9 3 P25942 100.0 3e-126 X-RAY
 2019-08-14 CYS G:63 G:83 10.0 0.074 -102.5 96.2 NA NA NA
CYS I:63 I:83 9.0 0.067 -121.3 82.1 NA NA NA
CYS J:63 J:83 9.0 0.067 -115.2 87.1 NA NA NA
CYS N:63 U:83 7.0 0.052 -88.3 89.1 NA NA NA
CYS O:63 V:83 14.0 0.104 61.5 66.0 NA NA NA
3qd6 2 P25942 97.71 4e-124 X-RAY
 2011-02-02 CYS G:63 R:83 13.0 0.096 -95.9 64.8 13.0 0.096 0.0
CYS H:63 S:83 12.0 0.089 -98.0 61.6 12.0 0.089 0.0
CYS I:63 T:83 13.0 0.096 -98.0 66.0 NA NA NA
CYS J:63 U:83 11.0 0.081 -96.3 64.4 NA NA NA
5dmi 1 P25942 98.83 8e-123 X-RAY
 2016-06-01 CYS A:61 A:83 7.0 0.052 81.7 73.7 7.0 0.052 0.0
5dmj 1 P25942 98.83 8e-123 X-RAY
 2016-06-01 CYS A:61 A:83 23.0 0.17 -94.1 95.0 23.0 0.17 0.0
CYS C:61 D:83 14.0 0.104 -103.3 89.1 NA NA NA
CYS E:61 F:83 11.0 0.081 -100.0 80.7 NA NA NA
5ihl 1 P25942 98.83 8e-123 X-RAY
 2016-06-01 CYS A:61 A:83 7.0 0.052 -89.8 110.1 7.0 0.052 0.0
CYS C:61 D:83 13.0 0.096 59.6 91.9 NA NA NA
CYS E:61 F:83 10.0 0.074 69.9 94.9 NA NA NA
CYS G:61 H:83 14.0 0.104 58.5 88.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p25942-f1 1 P25942 100.0 0.0 CYS A:83 A:83 10.0 0.074 -85.4 93.6