Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 44751298 | . | C | A | CCDS13393.1:NM_001250.4:c.306atC>atA_NP_001241.1:p.102I>I | Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6fax | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2018-02-07 | ILE | C:82 | R:102 | 75.0 | 0.429 | E | -113.0 | 133.7 | 75.0 | 0.429 | 0.0 |
HOH |
7.329 |
O |
O |
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| 6pe8 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | ILE | E:82 | T:102 | 69.0 | 0.394 | E | -111.1 | 139.9 | NA | NA | NA | ||||||
| ILE | F:82 | U:102 | 67.0 | 0.383 | E | -103.0 | 138.6 | 67.0 | 0.383 | 0.0 |
HOH |
8.445 |
O |
O |
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| 6pe9 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | ILE | G:82 | G:102 | 57.0 | 0.326 | E | -115.7 | 116.8 | NA | NA | NA | ||||||
| ILE | I:82 | I:102 | 62.0 | 0.354 | E | -124.3 | 131.3 | NA | NA | NA | |||||||||||||
| ILE | J:82 | J:102 | 69.0 | 0.394 | E | -109.2 | 131.9 | NA | NA | NA | |||||||||||||
| ILE | N:82 | U:102 | 57.0 | 0.326 | E | -117.9 | 119.2 | NA | NA | NA | |||||||||||||
| ILE | O:82 | V:102 | 63.0 | 0.36 | E | -115.0 | 128.5 | NA | NA | NA | |||||||||||||
| 3qd6 | 2 | P25942 | 97.71 | 4e-124 |
X-RAY |
2011-02-02 | ILE | G:82 | R:102 | 80.0 | 0.457 | E | -117.6 | 125.2 | 80.0 | 0.457 | 0.0 | ||||||
| ILE | H:82 | S:102 | 79.0 | 0.451 | E | -119.1 | 122.8 | 79.0 | 0.451 | 0.0 | |||||||||||||
| ILE | I:82 | T:102 | 76.0 | 0.434 | E | -120.4 | 122.2 | NA | NA | NA | |||||||||||||
| ILE | J:82 | U:102 | 76.0 | 0.434 | E | -113.3 | 128.1 | NA | NA | NA | |||||||||||||
| 5dmi | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | ILE | A:80 | A:102 | 34.0 | NA | B | -80.7 | 110.5 | 34.0 | NA | NA | ||||||
| 5dmj | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | ILE | A:80 | A:102 | 81.0 | 0.463 | E | -101.9 | 127.4 | 81.0 | 0.463 | 0.0 | ||||||
| ILE | C:80 | D:102 | 84.0 | 0.48 | E | -113.2 | 131.4 | NA | NA | NA | |||||||||||||
| ILE | E:80 | F:102 | 38.0 | NA | E | -97.0 | 131.4 | NA | NA | NA | |||||||||||||
| 5ihl | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | ILE | A:80 | A:102 | 34.0 | NA | E | -95.1 | 114.0 | 34.0 | NA | NA | ||||||
| ILE | C:80 | D:102 | 35.0 | NA | E | -95.2 | 114.3 | NA | NA | NA | |||||||||||||
| ILE | E:80 | F:102 | 39.0 | NA | E | -94.2 | 113.5 | NA | NA | NA | |||||||||||||
| ILE | G:80 | H:102 | 46.0 | NA | -107.1 | 135.8 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p25942-f1 | 1 | P25942 | 100.0 | 0.0 | ILE | A:102 | A:102 | 74.0 | 0.423 | E | -96.5 | 120.4 | |