Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 44751363 . C A CCDS13393.1:NM_001250.4:c.371tCa>tAa_NP_001241.1:p.124S>* Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fax 3 P25942 100.0 3e-126 X-RAY
2018-02-07 SER C:104 NA:NA DO NA DO DO DO NA NA NA
6pe8 3 P25942 100.0 3e-126 X-RAY
2019-08-14 SER E:104 T:124 55.0 0.478 -111.3 175.1 NA NA NA
SER F:104 U:124 46.0 0.4 -123.0 145.6 46.0 0.4 0.0 HOH
6.961
C
O
6pe9 3 P25942 100.0 3e-126 X-RAY
2019-08-14 SER G:104 G:124 111.0 0.965 -102.5 161.1 NA NA NA
SER I:104 NA:NA DO NA DO DO DO NA NA NA
SER J:104 NA:NA DO NA DO DO DO NA NA NA
SER N:104 U:124 106.0 0.922 -85.5 -71.1 NA NA NA
SER O:104 NA:NA DO NA DO DO DO NA NA NA
3qd6 2 P25942 97.71 4e-124 X-RAY
2011-02-02 SER G:104 R:124 113.0 0.983 -114.1 -178.7 113.0 0.983 0.0
SER H:104 S:124 119.0 1.0 -91.9 172.7 119.0 1.0 0.0
SER I:104 T:124 92.0 0.8 -144.8 -157.6 NA NA NA
SER J:104 U:124 122.0 1.0 -95.0 175.5 NA NA NA
5dmi 1 P25942 98.83 8e-123 X-RAY
2016-06-01 SER A:102 NA:NA DO NA DO DO DO NA NA NA
5dmj 1 P25942 98.83 8e-123 X-RAY
2016-06-01 SER A:102 A:124 70.0 0.609 -101.1 168.2 36.0 0.313 0.296 B:None:0.296
K
HOH
6.645
5.845
C
C
K
O
SER C:102 D:124 65.0 0.565 -119.4 157.5 NA NA NA
SER E:102 F:124 54.0 NA -120.6 147.1 NA NA NA
5ihl 1 P25942 98.83 8e-123 X-RAY
2016-06-01 SER A:102 A:124 55.0 0.478 -120.3 14.2 21.0 0.183 0.295 B:None:0.296
SER C:102 D:124 53.0 NA -68.2 131.6 NA NA NA
SER E:102 F:124 74.0 0.643 -109.3 86.8 NA NA NA
SER G:102 H:124 84.0 0.73 -69.7 116.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p25942-f1 1 P25942 100.0 0.0 SER A:124 A:124 59.0 0.513 -87.6 133.4