Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 44751389 | . | C | A | CCDS13393.1:NM_001250.4:c.397Cag>Aag_NP_001241.1:p.133Q>K | Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6fax | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2018-02-07 | GLN | C:113 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6pe8 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | GLN | E:113 | T:133 | 86.0 | 0.478 | E | -160.2 | 115.4 | NA | NA | NA | ||||||
| GLN | F:113 | U:133 | 109.0 | 0.606 | E | -139.3 | 113.9 | 109.0 | 0.606 | 0.0 |
HOH |
4.319 |
CA |
O |
|||||||||
| 6pe9 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | GLN | G:113 | G:133 | 51.0 | NA | S | -126.1 | 137.2 | NA | NA | NA | ||||||
| GLN | I:113 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| GLN | J:113 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| GLN | N:113 | U:133 | 45.0 | NA | S | -131.1 | 143.6 | NA | NA | NA | |||||||||||||
| GLN | O:113 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3qd6 | 2 | P25942 | 97.71 | 4e-124 |
X-RAY |
2011-02-02 | GLN | G:113 | R:133 | 125.0 | 0.694 | -76.3 | 132.9 | 125.0 | 0.694 | 0.0 | |||||||
| GLN | H:113 | S:133 | 131.0 | 0.728 | -82.5 | 108.5 | 131.0 | 0.728 | 0.0 | ||||||||||||||
| GLN | I:113 | T:133 | 98.0 | 0.544 | -117.4 | 125.8 | NA | NA | NA | ||||||||||||||
| GLN | J:113 | U:133 | 107.0 | 0.594 | B | -88.7 | 126.8 | NA | NA | NA | |||||||||||||
| 5dmi | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLN | A:111 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5dmj | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLN | A:111 | A:133 | 108.0 | 0.6 | 69.2 | 169.5 | 56.0 | 0.311 | 0.289 |
B:None:0.289 |
HOH |
4.047 |
O |
O |
||
| GLN | C:111 | D:133 | 107.0 | 0.594 | E | 69.3 | 171.4 | NA | NA | NA | |||||||||||||
| GLN | E:111 | F:133 | 109.0 | 0.606 | 66.1 | 166.5 | NA | NA | NA | ||||||||||||||
| 5ihl | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLN | A:111 | A:133 | 105.0 | 0.583 | 65.6 | 149.6 | 49.0 | 0.272 | 0.311 |
B:None:0.311 |
SO4 |
8.172 |
NE2 |
O4 |
||
| GLN | C:111 | D:133 | 101.0 | 0.561 | 48.1 | 140.1 | NA | NA | NA | ||||||||||||||
| GLN | E:111 | F:133 | 87.0 | 0.483 | 53.6 | 177.3 | NA | NA | NA | ||||||||||||||
| GLN | G:111 | H:133 | 109.0 | 0.606 | S | -161.2 | 139.5 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p25942-f1 | 1 | P25942 | 100.0 | 0.0 | GLN | A:133 | A:133 | 102.0 | 0.567 | E | -131.6 | 123.8 | |