Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 44751769 | . | A | C | CCDS13393.1:NM_001250.4:c.408acA>acC_NP_001241.1:p.136T>T | Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6fax | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2018-02-07 | THR | C:116 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6pe8 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | THR | E:116 | T:136 | 87.0 | 0.621 | -129.5 | -4.7 | NA | NA | NA | |||||||
| THR | F:116 | U:136 | 103.0 | 0.736 | B | -148.5 | 153.7 | 103.0 | 0.736 | 0.0 |
HOH |
7.426 |
CG2 |
O |
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| 6pe9 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | THR | G:116 | G:136 | 92.0 | 0.657 | B | -152.5 | -165.0 | NA | NA | NA | ||||||
| THR | I:116 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| THR | J:116 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| THR | N:116 | U:136 | 66.0 | 0.471 | -145.1 | -177.7 | NA | NA | NA | ||||||||||||||
| THR | O:116 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3qd6 | 2 | P25942 | 97.71 | 4e-124 |
X-RAY |
2011-02-02 | THR | G:116 | R:136 | 71.0 | 0.507 | -140.1 | -174.7 | 71.0 | 0.507 | 0.0 | |||||||
| THR | H:116 | S:136 | 86.0 | 0.614 | -146.0 | 25.7 | 86.0 | 0.614 | 0.0 | ||||||||||||||
| THR | I:116 | T:136 | 77.0 | 0.55 | -162.1 | 166.4 | NA | NA | NA | ||||||||||||||
| THR | J:116 | U:136 | 105.0 | 0.75 | -97.4 | -9.1 | NA | NA | NA | ||||||||||||||
| 5dmi | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | THR | A:114 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5dmj | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | THR | A:114 | A:136 | 49.0 | NA | B | 58.5 | 152.2 | 23.0 | NA | NA |
B:None:NA |
HOH |
8.632 |
N |
O |
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| THR | C:114 | D:136 | 74.0 | NA | T | -12.9 | 144.1 | NA | NA | NA | |||||||||||||
| THR | E:114 | F:136 | 50.0 | NA | S | 16.3 | 92.0 | NA | NA | NA | |||||||||||||
| 5ihl | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | THR | A:114 | A:136 | 69.0 | 0.493 | S | 56.5 | 150.6 | 42.0 | 0.3 | 0.193 |
B:None:0.193 |
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| THR | C:114 | D:136 | 63.0 | 0.45 | T | -54.1 | 151.1 | NA | NA | NA | |||||||||||||
| THR | E:114 | F:136 | 72.0 | 0.514 | S | 62.8 | 146.1 | NA | NA | NA | |||||||||||||
| THR | G:114 | H:136 | 106.0 | 0.757 | S | -160.4 | -120.2 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p25942-f1 | 1 | P25942 | 100.0 | 0.0 | THR | A:136 | A:136 | 66.0 | 0.471 | B | -114.3 | 172.3 | |