Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 44751791 | . | G | A | CCDS13393.1:NM_001250.4:c.430Gag>Aag_NP_001241.1:p.144E>K | Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6fax | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2018-02-07 | GLU | C:124 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6pe8 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | GLU | E:124 | T:144 | 73.0 | 0.384 | E | -151.4 | 136.3 | NA | NA | NA | ||||||
| GLU | F:124 | U:144 | 83.0 | 0.437 | E | -126.9 | 154.8 | 83.0 | 0.437 | 0.0 |
HOH |
5.996 |
N |
O |
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| 6pe9 | 3 | P25942 | 100.0 | 3e-126 |
X-RAY |
2019-08-14 | GLU | G:124 | G:144 | 43.0 | NA | E | -109.1 | 144.3 | NA | NA | NA | ||||||
| GLU | I:124 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| GLU | J:124 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| GLU | N:124 | U:144 | 96.0 | NA | -108.3 | 360.0 | NA | NA | NA | ||||||||||||||
| GLU | O:124 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3qd6 | 2 | P25942 | 97.71 | 4e-124 |
X-RAY |
2011-02-02 | GLU | G:124 | R:144 | 104.0 | 0.547 | 168.7 | 156.8 | 104.0 | 0.547 | 0.0 | |||||||
| GLU | H:124 | S:144 | 92.0 | 0.484 | 179.3 | 158.7 | 92.0 | 0.484 | 0.0 | ||||||||||||||
| GLU | I:124 | T:144 | 120.0 | 0.632 | -100.0 | 129.5 | NA | NA | NA | ||||||||||||||
| GLU | J:124 | U:144 | 136.0 | 0.716 | -108.6 | 100.3 | NA | NA | NA | ||||||||||||||
| 5dmi | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLU | A:122 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5dmj | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLU | A:122 | A:144 | 69.0 | 0.363 | E | -133.3 | 150.8 | 69.0 | 0.363 | 0.0 |
K HOH |
7.306 5.940 |
O O |
K O |
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| GLU | C:122 | D:144 | 35.0 | NA | E | -128.1 | 137.6 | NA | NA | NA | |||||||||||||
| GLU | E:122 | F:144 | 42.0 | NA | E | -96.1 | 142.4 | NA | NA | NA | |||||||||||||
| 5ihl | 1 | P25942 | 98.83 | 8e-123 |
X-RAY |
2016-06-01 | GLU | A:122 | A:144 | 96.0 | 0.505 | E | -113.3 | 127.6 | 96.0 | 0.505 | 0.0 | ||||||
| GLU | C:122 | D:144 | 109.0 | 0.574 | E | -64.7 | 176.1 | NA | NA | NA | |||||||||||||
| GLU | E:122 | F:144 | 66.0 | NA | -82.7 | 156.8 | NA | NA | NA | ||||||||||||||
| GLU | G:122 | H:144 | 91.0 | 0.479 | E | -153.0 | 143.3 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p25942-f1 | 1 | P25942 | 100.0 | 0.0 | GLU | A:144 | A:144 | 75.0 | 0.395 | E | -128.6 | 149.0 | |