Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 6759437 | . | A | C | CCDS13099.1:NM_001200.2:c.892Aga>Cga_NP_001191.1:p.298R>R | Homo sapiens bone morphogenetic protein 2 (BMP2), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1es7 | 1 | P12643 | 100.0 | 1e-82 |
X-RAY |
2000-10-07 | ARG | A:18 | A:16 | 92.0 | 0.409 | E | -82.2 | 141.3 | 92.0 | 0.409 | 0.0 |
HOH |
3.948 |
NH1 |
O |
||
| ARG | C:18 | C:516 | 93.0 | 0.413 | E | -80.6 | 143.0 | 93.0 | 0.413 | 0.0 |
HOH |
4.328 |
N |
O |
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| 2qj9 | 1 | P12643 | 100.0 | 1e-82 |
X-RAY |
2008-01-15 | ARG | A:18 | B:16 | 95.0 | 0.422 | E | -83.2 | 144.2 | 95.0 | 0.422 | 0.0 |
HOH |
2.803 |
NH1 |
O |
||
| ARG | B:18 | A:16 | 96.0 | 0.427 | E | -85.6 | 148.6 | 96.0 | 0.427 | 0.0 |
HOH |
2.763 |
N |
O |
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| 2qja | 1 | P12643 | 100.0 | 1e-82 |
X-RAY |
2008-01-15 | ARG | A:18 | A:16 | 98.0 | 0.436 | E | -86.8 | 147.9 | 98.0 | 0.436 | 0.0 |
HOH |
3.192 |
NH1 |
O |
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| ARG | B:18 | B:16 | 90.0 | 0.4 | E | -84.0 | 150.2 | 90.0 | 0.4 | 0.0 |
HOH |
2.917 |
NH2 |
O |
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| 2qjb | 1 | P12643 | 100.0 | 1e-82 |
X-RAY |
2008-01-15 | ARG | A:18 | A:16 | 102.0 | 0.453 | E | -87.4 | 140.8 | 90.0 | 0.4 | 0.053 |
C:P36894:0.053 |
HOH |
3.302 |
NH1 |
O |
|
| ARG | B:18 | B:16 | 93.0 | 0.413 | E | -83.1 | 141.1 | 86.0 | 0.382 | 0.031 |
D:P36894:0.031 |
HOH |
2.731 |
N |
O |
||||||||
| 1rew | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2004-05-04 | ARG | A:16 | A:16 | 99.0 | 0.44 | E | -82.5 | 141.0 | 98.0 | 0.436 | 0.004 |
C:P36894:0.004 |
HOH |
2.775 |
N |
O |
|
| ARG | B:16 | B:16 | 96.0 | 0.427 | E | -85.4 | 143.4 | 96.0 | 0.427 | 0.0 |
HOH |
2.797 |
N |
O |
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| 2goo | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2006-05-09 | ARG | A:16 | A:16 | 104.0 | 0.462 | E | -81.1 | 134.3 | 102.0 | 0.453 | 0.009 |
B:P36894:0.009 |
HOH |
2.856 |
NH1 |
O |
|
| ARG | D:16 | D:16 | 102.0 | 0.453 | E | -78.2 | 135.8 | 96.0 | 0.427 | 0.026 |
E:P36894:0.027 |
HOH |
3.078 |
N |
O |
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| 2h62 | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2007-04-10 | ARG | A:16 | A:16 | 98.0 | 0.436 | E | -71.5 | 139.4 | 98.0 | 0.436 | 0.0 |
HOH |
2.565 |
O |
O |
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| ARG | B:16 | B:16 | 103.0 | 0.458 | E | -83.2 | 135.6 | 88.0 | 0.391 | 0.067 |
C:P36894:0.067 |
HOH |
2.866 |
N |
O |
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| 3bmp | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2000-03-12 | ARG | A:16 | A:16 | 102.0 | 0.453 | E | -88.7 | 135.7 | 102.0 | 0.453 | 0.0 |
HOH |
3.321 |
O |
O |
||
| 4uhy | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2015-05-06 | ARG | A:16 | A:298 | 99.0 | 0.44 | E | -76.9 | 146.6 | 99.0 | 0.44 | 0.0 | ||||||
| ARG | B:16 | B:298 | 101.0 | 0.449 | E | -76.0 | 146.1 | 101.0 | 0.449 | 0.0 | |||||||||||||
| 4uhz | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2015-05-06 | ARG | A:16 | A:298 | 103.0 | 0.458 | E | -86.6 | 141.3 | 103.0 | 0.458 | 0.0 |
SO4 SO4 SO4 |
8.804 8.892 2.876 |
N NH1 NE |
O2 O1 O3 |
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| 4ui0 | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2015-05-06 | ARG | A:16 | A:298 | 98.0 | 0.436 | E | -81.7 | 150.3 | 98.0 | 0.436 | 0.0 |
FLC HOH |
9.312 7.581 |
NH1 CG |
OB1 O |
||
| ARG | B:16 | B:298 | 98.0 | 0.436 | E | -81.9 | 149.8 | 98.0 | 0.436 | 0.0 |
HOH |
7.482 |
NH1 |
O |
|||||||||
| 4ui1 | 1 | P12643 | 100.0 | 2e-82 |
X-RAY |
2015-05-06 | ARG | A:16 | A:298 | 104.0 | 0.462 | E | -86.6 | 137.0 | 104.0 | 0.462 | 0.0 |
HOH |
3.227 |
NE |
O |
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| ARG | B:16 | B:298 | 104.0 | 0.462 | E | -86.1 | 137.3 | NA | NA | NA | |||||||||||||
| 4ui2 | 2 | P12643 | 100.0 | 2e-82 |
X-RAY |
2015-05-06 | ARG | B:16 | B:298 | 103.0 | 0.458 | E | -95.5 | 138.4 | 103.0 | 0.458 | 0.0 |
SRT |
2.996 |
NE |
O11 |
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| 2h64 | 1 | P12643 | 98.25 | 8e-81 |
X-RAY |
2007-04-10 | ARG | A:16 | A:16 | 107.0 | 0.476 | E | -81.2 | 141.5 | 107.0 | 0.476 | 0.0 |
HOH |
2.835 |
N |
O |
||
| 3bk3 | 1 | P12643 | 98.25 | 1e-80 |
X-RAY |
2008-05-27 | ARG | A:16 | A:16 | 123.0 | 0.547 | E | -80.2 | 152.2 | 123.0 | 0.547 | 0.0 |
HOH |
3.343 |
NE |
O |
||
| ARG | B:16 | B:16 | 116.0 | 0.516 | E | -81.2 | 146.2 | 116.0 | 0.516 | 0.0 |
HOH |
3.746 |
NE |
O |
|||||||||
| 6omn | 1 | P12643 | 100.0 | 1e-77 |
X-RAY |
2019-05-08 | ARG | A:10 | E:16 | 99.0 | 0.44 | E | -89.2 | 133.5 | 99.0 | 0.44 | 0.0 |
NAG NAG BMA MAN MAN |
4.396 3.687 5.805 2.792 4.648 |
N NH2 NH1 NH1 NH2 |
O7 O6 C2 O6 O6 |
||
| ARG | B:10 | F:16 | 96.0 | 0.427 | E | -94.6 | 132.1 | 96.0 | 0.427 | 0.0 |
NAG NAG BMA MAN MAN |
4.356 3.526 6.060 2.845 5.356 |
N NH2 NH1 NH1 NH2 |
O7 O6 C2 O6 O6 |
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| ARG | C:10 | G:16 | 103.0 | 0.458 | E | -82.2 | 135.0 | NA | NA | NA | |||||||||||||
| ARG | D:10 | H:16 | 101.0 | 0.449 | E | -77.1 | 133.3 | NA | NA | NA | |||||||||||||
| 1reu | 1 | P12643 | 99.03 | 2e-75 |
X-RAY |
2004-05-04 | ARG | A:5 | A:16 | 99.0 | 0.44 | E | -86.9 | 143.4 | 99.0 | 0.44 | 0.0 |
HOH |
7.707 |
CA |
O |
||
| 4mid | 1 | ? | 81.42 | 2e-68 |
X-RAY |
2014-05-07 | ARG | A:17 | A:16 | 122.0 | 0.542 | E | -98.1 | 126.1 | 122.0 | 0.542 | 0.0 |
HOH |
2.777 |
N |
O |
||
| 6oml | 1 | ? | 85.71 | 9e-65 |
X-RAY |
2019-05-15 | ARG | A:6 | X:16 | 93.0 | 0.413 | E | -80.7 | 138.1 | 93.0 | 0.413 | 0.0 |
HOH |
4.265 |
NH2 |
O |
||
| ARG | B:6 | Y:16 | 95.0 | 0.422 | E | -84.6 | 138.4 | 95.0 | 0.422 | 0.0 |
NAG NAG BMA MAN MAN HOH |
4.253 3.269 5.967 3.032 3.333 3.527 |
N NH2 NH1 NH1 NH2 NE |
O7 O6 C2 O6 O6 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p12643-f1 | 1 | P12643 | 100.0 | 0.0 | ARG | A:298 | A:298 | 93.0 | 0.413 | E | -75.7 | 134.7 | |