Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 6759443 . C A CCDS13099.1:NM_001200.2:c.898Cct>Act_NP_001191.1:p.300P>T Homo sapiens bone morphogenetic protein 2 (BMP2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1es7 1 P12643 100.0 1e-82 X-RAY
 2000-10-07 PRO A:20 A:18 100.0 0.69 -80.4 140.8 100.0 0.69 0.0 HOH
 3.146
 CA
 O
PRO C:20 C:518 99.0 0.683 -81.4 142.3 99.0 0.683 0.0 HOH
 3.226
 CA
 O
2qj9 1 P12643 100.0 1e-82 X-RAY
 2008-01-15 PRO A:20 B:18 101.0 0.697 -64.6 146.2 101.0 0.697 0.0 HOH
 4.249
 O
 O
PRO B:20 A:18 101.0 0.697 -67.1 138.9 100.0 0.69 0.007 A:P12643:0.007
 HOH
 3.243
 CA
 O
2qja 1 P12643 100.0 1e-82 X-RAY
 2008-01-15 PRO A:20 A:18 103.0 0.71 -73.3 139.7 101.0 0.697 0.013 B:P12643:0.014
 HOH
 4.501
 O
 O
PRO B:20 B:18 104.0 0.717 -72.4 153.1 103.0 0.71 0.007 A:P12643:0.007
 HOH
 9.101
 O
 O
2qjb 1 P12643 100.0 1e-82 X-RAY
 2008-01-15 PRO A:20 A:18 101.0 0.697 -67.9 146.9 101.0 0.697 0.0 HOH
 9.221
 O
 O
PRO B:20 B:18 98.0 0.676 -74.3 148.5 98.0 0.676 0.0 HOH
 3.424
 CA
 O
1rew 1 P12643 100.0 2e-82 X-RAY
 2004-05-04 PRO A:18 A:18 105.0 0.724 -65.6 143.7 105.0 0.724 0.0 HOH
 3.611
 CA
 O
PRO B:18 B:18 106.0 0.731 -67.8 142.3 105.0 0.724 0.007 A:P12643:0.007
 HOH
 3.380
 CA
 O
2goo 1 P12643 100.0 2e-82 X-RAY
 2006-05-09 PRO A:18 A:18 103.0 0.71 -69.7 147.9 103.0 0.71 0.0 HOH
 2.812
 O
 O
PRO D:18 D:18 105.0 0.724 -68.4 139.3 105.0 0.724 0.0 HOH
 3.765
 CA
 O
2h62 1 P12643 100.0 2e-82 X-RAY
 2007-04-10 PRO A:18 A:18 103.0 0.71 -66.6 148.2 103.0 0.71 0.0 HOH
 2.641
 O
 O
PRO B:18 B:18 107.0 0.738 -71.3 149.2 106.0 0.731 0.007 A:P12643:0.007
 HOH
 2.443
 O
 O
3bmp 1 P12643 100.0 2e-82 X-RAY
 2000-03-12 PRO A:18 A:18 109.0 0.752 -70.6 147.0 108.0 0.745 0.007 A:P12643:0.007
 HOH
 3.326
 O
 O
4uhy 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 PRO A:18 A:300 107.0 0.738 -77.4 153.2 106.0 0.731 0.007 B:P12643:0.007
PRO B:18 B:300 106.0 0.731 -77.1 153.0 104.0 0.717 0.014 A:P12643:0.014
4uhz 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 PRO A:18 A:300 106.0 0.731 -63.8 146.9 106.0 0.731 0.0 SO4
 5.440
 N
 O2
4ui0 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 PRO A:18 A:300 108.0 0.745 -69.2 148.3 108.0 0.745 0.0 HOH
 9.812
 O
 O
PRO B:18 B:300 109.0 0.752 -68.0 148.9 109.0 0.752 0.0 HOH
 9.627
 O
 O
4ui1 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 PRO A:18 A:300 106.0 0.731 -71.7 143.7 106.0 0.731 0.0 HOH
 4.622
 N
 O
PRO B:18 B:300 108.0 0.745 -72.5 144.6 NA NA NA
4ui2 2 P12643 100.0 2e-82 X-RAY
 2015-05-06 PRO B:18 B:300 99.0 0.683 -76.7 154.1 99.0 0.683 0.0 SRT
SRT
 3.212
7.540
 CD
CB
 O2
O11
2h64 1 P12643 98.25 8e-81 X-RAY
 2007-04-10 PRO A:18 A:18 102.0 0.703 -75.8 148.1 100.0 0.69 0.013 A:P12643:0.014
 HOH
 2.851
 O
 O
3bk3 1 P12643 98.25 1e-80 X-RAY
 2008-05-27 PRO A:18 A:18 108.0 0.745 -61.0 145.7 108.0 0.745 0.0 HOH
 3.452
 N
 O
PRO B:18 B:18 107.0 0.738 -69.4 145.7 107.0 0.738 0.0 HOH
 3.429
 CB
 O
6omn 1 P12643 100.0 1e-77 X-RAY
 2019-05-08 PRO A:12 E:18 100.0 0.69 E -72.2 142.7 100.0 0.69 0.0 MAN
MAN
 9.548
7.498
 CA
CG
 C6
O6
PRO B:12 F:18 105.0 0.724 -74.7 149.2 105.0 0.724 0.0 NAG
MAN
MAN
 9.918
9.548
6.748
 N
CA
CB
 O6
O6
O6
PRO C:12 G:18 102.0 0.703 E -78.2 151.1 NA NA NA
PRO D:12 H:18 105.0 0.724 -61.5 144.1 NA NA NA
1reu 1 P12643 99.03 2e-75 X-RAY
 2004-05-04 PRO A:7 A:18 106.0 0.731 -67.5 145.7 106.0 0.731 0.0 HOH
 9.272
 O
 O
4mid 1 ? 81.42 2e-68 X-RAY
 2014-05-07 PRO A:19 A:18 104.0 0.717 -73.7 142.7 104.0 0.717 0.0 HOH
 3.349
 C
 O
6oml 1 ? 85.71 9e-65 X-RAY
 2019-05-15 PRO A:8 X:18 99.0 0.683 -79.6 159.0 80.0 0.552 0.131 B:None:0.131
 HOH
 4.198
 N
 O
PRO B:8 Y:18 104.0 0.717 E -82.8 139.7 88.0 0.607 0.11 A:None:0.11
 NAG
MAN
MAN
HOH
 9.549
9.835
8.080
3.746
 N
CA
CB
CD
 O6
O6
O4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p12643-f1 1 P12643 100.0 0.0 PRO A:300 A:300 104.0 0.717 -68.9 133.7