Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 10280037 . C A CCDS13109.1:NM_003081.3:c.529Cag>Aag_NP_003072.2:p.177Q>K Homo sapiens synaptosome associated protein 25kDa (SNAP25), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6mdm 2 P60881 100.0 2e-149 EM
 2018-09-19 GLN G:180 H:177 31.0 0.172 H -63.0 -38.9 31.0 0.172 0.0
6mdn 2 P60881 100.0 2e-149 EM
 2018-09-19 GLN G:180 H:177 39.0 0.217 H -64.3 -33.9 39.0 0.217 0.0
6mdo 2 P60881 100.0 2e-149 EM
 2018-09-19 GLN G:180 NA:NA DO NA DO DO DO NA NA NA
6mdp 2 P60881 100.0 2e-149 EM
 2018-09-19 GLN G:180 NA:NA DO NA DO DO DO NA NA NA
3j97 5 ? 98.48 1e-141 EM
 2015-01-28 GLN M:171 M:177 14.0 0.078 H -85.5 -37.0 14.0 0.078 0.0
3j96 5 ? 98.4 3e-134 EM
 2015-01-28 GLN M:161 M:177 21.0 0.117 H -63.2 -38.4 12.0 0.067 0.05 I:P54921:0.05
3j98 5 ? 98.4 3e-134 EM
 2015-01-28 GLN M:161 M:177 8.0 0.044 H -72.4 -39.8 5.0 0.028 0.016 I:P54921:0.017
3j99 5 ? 98.4 3e-134 EM
 2015-01-28 GLN M:161 M:177 7.0 0.039 H -72.5 -39.7 7.0 0.039 0.0
1sfc 4 P60881 100.0 1e-56 X-RAY
 1998-10-28 GLN D:58 D:177 86.0 0.478 H -52.9 -53.3 13.0 0.072 0.406 C:P60881:0.406
 SR
HOH
 4.689
2.878
 OE1
OE1
 SR
O
GLN H:58 H:177 90.0 0.5 H -63.6 -46.0 NA NA NA
GLN L:58 L:177 88.0 0.489 H -73.4 -42.9 NA NA NA
6ip1 4 P60881 100.0 2e-52 EM
 2019-04-24 GLN D:54 D:177 95.0 0.528 H -76.1 -34.3 16.0 0.089 0.439 C:P60881:0.439
2n1t 4 P60880 100.0 6e-47 NMR
 2015-06-03 GLN D:47 D:177 76.0 0.422 H -62.4 -35.2 33.0 0.183 0.239 C:P60880:0.239
1n7s 4 P60881 100.0 9e-39 X-RAY
 2002-12-27 GLN D:39 D:177 86.0 0.478 H -66.4 -39.9 11.0 0.061 0.417 C:P60881:0.417
 HOH
 2.632
 OE1
 O
5kj7 4 P60881 100.0 1e-38 X-RAY
 2016-10-19 GLN D:37 D:177 85.0 0.472 H -60.1 -40.2 16.0 0.089 0.383 C:P60881:0.383
 CA
CA
 3.687
4.893
 OE1
NE2
 CA
CA
GLN J:37 J:177 93.0 0.517 H -60.5 -38.1 NA NA NA
5kj8 4 P60881 100.0 1e-38 X-RAY
 2016-10-19 GLN D:37 D:177 83.0 0.461 H -60.6 -43.0 18.0 0.1 0.361 C:P60881:0.361
 CA
CA
 3.797
6.097
 OE1
NE2
 CA
CA
GLN J:37 J:177 87.0 0.483 H -61.0 -40.2 NA NA NA
6wvw 4 P60881 100.0 1e-38 X-RAY
 2021-03-17 GLN D:37 D:177 92.0 0.511 H -62.9 -40.1 14.0 0.078 0.433 C:P60881:0.433
 CA
HOH
 2.942
2.829
 OE1
OE1
 CA
O
GLN H:37 H:177 91.0 0.506 H -62.8 -40.2 NA NA NA
3hd7 4 P60881 100.0 1e-38 X-RAY
 2009-07-14 GLN D:41 D:177 90.0 0.5 H -67.0 -55.1 14.0 0.078 0.422 C:P60881:0.422
GLN H:41 H:177 88.0 0.489 H -67.3 -53.9 NA NA NA
3ipd 4 P60881 100.0 1e-38 X-RAY
 2009-09-01 GLN D:41 D:177 92.0 0.511 H -63.3 -55.2 23.0 0.128 0.383 C:P60881:0.383
GLN H:41 H:177 94.0 0.522 H -63.5 -54.7 NA NA NA
5ccg 4 P60881 100.0 1e-38 X-RAY
 2015-08-12 GLN D:38 D:177 84.0 0.467 H -58.8 -41.1 16.0 0.089 0.378 C:P60881:0.378
 CA
CA
 3.773
5.036
 OE1
NE2
 CA
CA
GLN J:38 J:177 91.0 0.506 H -59.5 -39.4 NA NA NA
5cch 4 P60881 100.0 1e-38 X-RAY
 2015-08-12 GLN D:38 D:177 96.0 0.533 H -58.9 -47.7 19.0 0.106 0.427 C:P60881:0.428
5cci 4 P60881 100.0 1e-38 X-RAY
 2015-08-12 GLN D:38 D:177 104.0 0.578 H -61.3 -40.2 23.0 0.128 0.45 C:P60881:0.45
5w5c 4 P60881 100.0 1e-38 X-RAY
 2017-08-23 GLN D:38 D:177 93.0 0.517 H -68.6 -41.0 12.0 0.067 0.45 C:P60881:0.45
 MG
HOH
 4.351
2.531
 OE1
OE1
 MG
O
5w5d 4 P60881 100.0 1e-38 X-RAY
 2017-08-23 GLN D:38 D:177 86.0 0.478 H -63.4 -45.7 11.0 0.061 0.417 C:P60881:0.417
 MG
HOH
 4.673
2.916
 OE1
OE1
 MG
O
6mti 6 P60881 100.0 1e-38 EM
 2019-04-24 GLN J:38 D:177 101.0 0.561 H -61.3 -40.2 24.0 0.133 0.428 I:P60881:0.428
GLN N:38 H:177 104.0 0.578 H -61.4 -40.1 23.0 0.128 0.45 M:P60881:0.45
GLN R:38 L:177 104.0 0.578 H -61.3 -40.3 23.0 0.128 0.45 Q:P60881:0.45
GLN V:38 P:177 105.0 0.583 H -61.4 -40.2 23.0 0.128 0.455 U:P60881:0.456
GLN Z:38 T:177 102.0 0.567 H -61.3 -40.2 23.0 0.128 0.439 Y:P60881:0.439
GLN DA:38 X:177 103.0 0.572 H -61.3 -40.3 25.0 0.139 0.433 CA:P60881:0.433
1urq 4 P13795 98.44 2e-38 X-RAY
 2004-08-26 GLN D:42 D:176 91.0 0.506 H -64.0 -42.1 16.0 0.089 0.417 C:P13795:0.417
 HOH
 2.506
 OE1
 O
5low 3 P60881 100.0 6e-38 X-RAY
 2017-06-21 GLN E:56 E:177 105.0 0.583 H -61.8 -37.0 13.0 0.072 0.511 D:P60881:0.511
 HOH
 4.972
 NE2
 O
GLN G:56 G:177 91.0 0.506 H -64.8 -41.5 25.0 0.139 0.367 F:P60881:0.367
 HOH
 6.662
 CG
 O
GLN L:56 L:177 117.0 0.65 H -71.1 -46.9 NA NA NA
GLN N:56 N:177 93.0 0.517 H -62.9 -32.9 NA NA NA
3rk2 4 P60880 100.0 8e-38 X-RAY
 2011-07-27 GLN D:39 D:177 89.0 0.494 H -65.8 -44.0 11.0 0.061 0.433 C:P60880:0.433
 HOH
 5.459
 N
 O
GLN H:39 H:177 89.0 0.494 H -75.1 -41.9 NA NA NA
3rk3 4 P60880 100.0 8e-38 X-RAY
 2011-07-27 GLN D:39 D:177 97.0 0.539 H -60.5 -41.7 13.0 0.072 0.467 C:P60880:0.467
3rl0 4 P60880 100.0 8e-38 X-RAY
 2011-07-27 GLN D:39 D:177 93.0 0.517 H -60.6 -41.4 9.0 0.05 0.467 C:P60880:0.467
GLN H:39 H:177 93.0 0.517 H -59.9 -41.2 NA NA NA
GLN L:39 L:177 94.0 0.522 H -59.8 -42.2 NA NA NA
GLN P:39 P:177 94.0 0.522 H -60.8 -42.3 NA NA NA
GLN T:39 T:177 92.0 0.511 H -59.8 -41.3 NA NA NA
GLN X:39 X:177 95.0 0.528 H -60.4 -42.3 NA NA NA
GLN BA:39 b:177 92.0 0.511 H -60.6 -42.0 NA NA NA
GLN FA:39 f:177 95.0 0.528 H -60.1 -42.2 NA NA NA
5lob 3 P60881 100.0 1e-37 X-RAY
 2017-06-21 GLN E:70 E:177 82.0 0.456 H -84.8 -35.3 10.0 0.056 0.4 D:P60881:0.4
GLN G:70 G:177 81.0 0.45 H -70.0 -32.8 7.0 0.039 0.411 F:P60881:0.411
 SO4
SO4
 5.719
3.977
 OE1
OE1
 O4
O1
1kil 4 P60880 100.0 1e-37 X-RAY
 2002-03-13 GLN D:39 D:177 87.0 0.483 H -63.7 -36.9 16.0 0.089 0.394 C:P60880:0.394
 MG
HOH
 5.002
2.925
 OE1
OE1
 MG
O
1xtg 2 P60880 100.0 3e-35 X-RAY
 2004-12-21 GLN B:32 B:177 179.0 0.994 -131.9 166.9 129.0 0.717 0.277 A:33321098:0.278
 HOH
 2.837
 OE1
 O
3zur 1 P10845,P60880 98.41 9e-34 X-RAY
 2011-12-07 GLN A:483 NA:NA DO NA DO DO DO NA NA NA
GLN B:483 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p60880-f1 1 P60880 95.63 1e-143 GLN A:177 A:177 22.0 0.122 H -67.5 -44.2