Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1559233 . C A CCDS13019.1:NM_006065.3:c.184Gtg>Ttg_NP_006056.2:p.62V>L Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 87.81 0.0 X-RAY
 2009-07-21 VAL A:33 A:33 102.0 0.658 -65.9 141.2 102.0 0.658 0.0 HOH
 7.502
 N
 O
2jju 1 O00241 100.0 3e-82 X-RAY
 2008-08-05 VAL A:33 A:33 99.0 0.639 -67.6 137.7 99.0 0.639 0.0 CL
HOH
 3.276
2.947
 N
O
 CL
O
VAL B:33 B:33 91.0 0.587 -71.8 147.0 NA NA NA
4cmm 1 P78324 89.92 9e-74 X-RAY
 2014-02-26 VAL A:33 A:33 117.0 0.755 S -58.5 129.7 25.0 0.161 0.594 B:Q08722:0.594
 HOH
 2.636
 O
 O
2jjv 1 Q5TFQ8 89.92 1e-73 X-RAY
 2008-08-05 VAL A:33 A:33 91.0 0.587 -69.4 139.5 91.0 0.587 0.0
VAL B:33 B:33 85.0 0.548 -65.7 144.8 NA NA NA
6nmr 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 VAL C:33 S:33 93.0 0.6 -65.2 135.8 10.0 0.065 0.535 B:None:0.503
A:None:0.142
 HOH
 3.772
 CG2
 O
VAL F:33 E:33 91.0 0.587 -67.8 135.7 NA NA NA
VAL I:33 I:33 85.0 0.548 -65.3 133.8 NA NA NA
VAL L:33 M:33 94.0 0.606 -65.0 134.7 NA NA NA
6nms 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 VAL C:33 S:33 77.0 0.497 -68.3 138.4 77.0 0.497 0.0
VAL F:33 C:33 85.0 0.548 -70.4 143.3 NA NA NA
6nmt 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 VAL C:33 C:33 93.0 0.6 -67.6 149.1 93.0 0.6 0.0 HOH
 2.734
 O
 O
6nmu 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 VAL C:33 S:33 98.0 0.632 -75.5 154.5 98.0 0.632 0.0 HOH
 3.326
 CA
 O
VAL F:33 C:33 82.0 0.529 -73.7 148.4 NA NA NA
6nmv 1 P78324 89.08 1e-72 X-RAY
 2019-08-07 VAL A:33 S:33 92.0 0.594 -66.1 145.1 92.0 0.594 0.0
6bit 3 P78324 89.74 3e-72 X-RAY
 2017-12-06 VAL C:33 H:33 100.0 0.645 -71.2 147.6 90.0 0.581 0.064 A:None:0.065
 HOH
 2.559
 O
 O
VAL F:33 G:33 118.0 0.761 -71.0 135.5 NA NA NA
7kpg 3 P78324 89.57 4e-70 X-RAY
 2020-12-16 VAL C:31 S:33 78.0 0.503 -71.5 152.4 2.0 0.013 0.49 B:None:0.49
 HOH
 3.888
 CA
 O
2jjs 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 VAL A:33 A:33 109.0 0.703 S -61.6 129.6 25.0 0.161 0.542 C:Q08722:0.542
 IOD
IOD
IOD
IOD
HOH
 6.818
9.559
4.110
5.173
2.575
 N
N
N
CG2
O
 I
I
I
I
O
VAL B:33 B:33 113.0 0.729 S -60.8 132.1 NA NA NA
2jjt 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 VAL A:33 A:33 108.0 0.697 S -59.7 125.3 19.0 0.123 0.574 C:Q08722:0.574
 HOH
 6.862
 CG1
 O
VAL B:33 B:33 113.0 0.729 S -60.3 125.5 NA NA NA
2uv3 1 P78324 88.24 2e-69 X-RAY
 2007-03-27 VAL A:33 A:33 103.0 0.665 -64.8 142.1 103.0 0.665 0.0 SO4
SO4
MES
HOH
 9.822
6.625
9.204
2.671
 CG1
CG2
N
O
 O1
O1
O1
O
VAL B:33 B:33 95.0 0.613 -64.7 138.5 95.0 0.613 0.0 MES
HOH
 9.187
3.266
 N
N
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 100.0 0.0 VAL A:62 A:62 107.0 0.69 -62.3 134.0
af-p78324-f1 1 P78324 86.98 0.0 VAL A:63 A:63 107.0 0.69 -60.3 132.9