Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 31376690 . G A CCDS13204.1:NM_175850.2:c.721Gtg>Atg_NP_787046.1:p.241V>M Homo sapiens DNA methyltransferase 3 beta (DNMT3B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6pa7 8 Q9UBC3 97.31 0.0 EM
 2020-06-17 VAL L:229 NA:NA DO NA DO DO DO NA NA NA
VAL N:229 NA:NA DO NA DO DO DO NA NA NA
5ciu 1 Q9UBC3 100.0 1e-103 X-RAY
 2016-03-30 VAL A:24 A:229 0.0 0.0 E -141.6 158.8 0.0 0.0 0.0 HOH
 4.475
 CG1
 O
VAL B:24 B:229 1.0 0.006 E -142.1 163.9 NA NA NA
5nr3 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 0.0 0.0 E -137.3 162.3 0.0 0.0 0.0 95E
HOH
 9.805
4.488
 O
CG1
 C14
O
VAL B:24 B:229 0.0 0.0 E -138.4 163.7 NA NA NA
5nrr 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 0.0 0.0 E -138.8 164.2 0.0 0.0 0.0 96E
HOH
 9.943
4.570
 O
CG1
 C06
O
VAL B:24 B:229 1.0 0.006 E -139.0 164.2 1.0 0.006 0.0 96E
HOH
 9.792
4.663
 O
CG1
 C07
O
5nrs 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 0.0 0.0 E -138.6 161.8 0.0 0.0 0.0 962
HOH
 9.460
4.328
 O
CG1
 O4
O
VAL B:24 B:229 0.0 0.0 E -143.6 166.0 0.0 0.0 0.0 962
HOH
 9.792
6.419
 O
N
 O4
O
5nrv 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-06-13 VAL A:24 D:229 0.0 0.0 E -136.0 164.5 0.0 0.0 0.0 96K
HOH
 9.548
4.645
 O
CG1
 C11
O
VAL B:24 A:229 0.0 0.0 E -138.5 164.3 0.0 0.0 0.0 96K
HOH
 9.537
5.149
 O
N
 C14
O
5nv0 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 1.0 0.006 E -132.6 162.9 1.0 0.006 0.0 9AH
HOH
 9.561
4.513
 O
CG1
 C8
O
VAL B:24 B:229 0.0 0.0 E -140.3 162.2 0.0 0.0 0.0 9AH
HOH
 9.491
5.822
 O
N
 C12
O
5nv2 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 1.0 0.006 E -138.2 162.3 1.0 0.006 0.0 9AE
HOH
 9.708
4.429
 O
CG1
 C11
O
VAL B:24 B:229 0.0 0.0 E -142.6 164.6 0.0 0.0 0.0 HOH
 4.484
 CG1
 O
5nv7 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 0.0 0.0 E -136.4 162.5 0.0 0.0 0.0 HOH
 6.010
 N
 O
VAL B:24 B:229 0.0 0.0 E -144.2 161.7 NA NA NA
5nvo 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:24 A:229 0.0 0.0 E -138.9 166.5 0.0 0.0 0.0 CHT
HOH
 9.688
4.619
 O
CG1
 C6
O
VAL B:24 B:229 0.0 0.0 E -140.4 165.4 NA NA NA
3flg 1 Q9UBC3 100.0 1e-103 X-RAY
 2009-03-31 VAL A:25 A:25 0.0 0.0 E -139.4 162.8 0.0 0.0 0.0 HOH
 4.533
 CG1
 O
3qkj 1 Q59H79 100.0 1e-103 X-RAY
 2011-03-09 VAL A:25 A:229 0.0 0.0 E -137.4 168.6 0.0 0.0 0.0 BTB
HOH
 9.686
4.542
 O
CG1
 C1
O
VAL B:25 B:229 0.0 0.0 E -137.6 169.5 NA NA NA
VAL C:25 C:229 0.0 0.0 E -137.1 169.3 NA NA NA
VAL D:25 D:229 0.0 0.0 E -137.2 169.6 NA NA NA
6r3e 1 Q9UBC3 99.28 2e-93 X-RAY
 2020-04-08 VAL A:15 A:229 0.0 0.0 E -137.5 157.5 0.0 0.0 0.0 96H
HOH
 9.439
4.617
 O
CG1
 C03
O
VAL B:15 B:229 0.0 0.0 E -140.7 154.5 NA NA NA
1khc 1 O88509 93.75 1e-92 X-RAY
 2002-02-27 VAL A:18 A:236 0.0 0.0 E -145.1 175.4 0.0 0.0 0.0 HOH
 4.451
 CG1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ubc3-f1 1 Q9UBC3 100.0 0.0 VAL A:229 A:229 0.0 0.0 E -136.0 153.9