Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 31376696 . G A CCDS13204.1:NM_175850.2:c.727Gga>Aga_NP_787046.1:p.243G>R Homo sapiens DNA methyltransferase 3 beta (DNMT3B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6pa7 8 Q9UBC3 97.31 0.0 EM
 2020-06-17 GLY L:231 NA:NA DO NA DO DO DO NA NA NA
GLY N:231 NA:NA DO NA DO DO DO NA NA NA
5ciu 1 Q9UBC3 100.0 1e-103 X-RAY
 2016-03-30 GLY A:26 A:231 0.0 0.0 E -126.1 143.1 0.0 0.0 0.0 HOH
 2.890
 O
 O
GLY B:26 B:231 0.0 0.0 E -134.1 145.6 NA NA NA
5nr3 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -124.1 139.2 0.0 0.0 0.0 95E
SO4
HOH
 5.537
9.323
2.873
 O
O
O
 C14
O4
O
GLY B:26 B:231 0.0 0.0 E -126.4 141.0 NA NA NA
5nrr 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -124.9 144.6 0.0 0.0 0.0 96E
SO4
HOH
 5.011
9.569
2.805
 O
O
O
 C07
O1
O
GLY B:26 B:231 1.0 0.013 E -128.7 146.2 1.0 0.013 0.0 96E
HOH
 4.911
2.785
 O
O
 C07
O
5nrs 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -125.9 138.7 0.0 0.0 0.0 962
HOH
 4.660
2.859
 O
O
 O4
O
GLY B:26 B:231 1.0 0.013 E -129.0 146.0 1.0 0.013 0.0 962
 4.714
 O
 O4
5nrv 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-06-13 GLY A:26 D:231 0.0 0.0 E -121.4 145.7 0.0 0.0 0.0 96K
SO4
HOH
 5.232
9.338
2.976
 O
O
O
 C11
O1
O
GLY B:26 A:231 0.0 0.0 E -121.0 147.2 0.0 0.0 0.0 96K
SO4
HOH
 4.953
9.272
2.942
 O
O
O
 C14
O1
O
5nv0 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -121.4 142.8 0.0 0.0 0.0 9AH
SO4
SO4
HOH
 5.568
9.366
9.903
2.887
 O
O
C
O
 C9
O2
O1
O
GLY B:26 B:231 0.0 0.0 E -134.9 139.8 0.0 0.0 0.0 9AH
SO4
HOH
 4.793
8.638
7.208
 O
O
O
 C12
O1
O
5nv2 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -120.3 142.3 0.0 0.0 0.0 9AE
SO4
HOH
 4.804
9.514
2.907
 O
O
O
 C11
O1
O
GLY B:26 B:231 0.0 0.0 E -124.8 142.2 0.0 0.0 0.0 9AE
SO4
HOH
 5.138
8.442
7.133
 O
O
O
 C12
O2
O
5nv7 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -123.7 142.8 0.0 0.0 0.0 9AK
HOH
 6.047
2.976
 O
O
 N4
O
GLY B:26 B:231 0.0 0.0 E -134.4 147.1 NA NA NA
5nvo 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 GLY A:26 A:231 0.0 0.0 E -125.0 138.4 0.0 0.0 0.0 CHT
SO4
SO4
HOH
 5.630
9.440
9.570
2.747
 O
C
O
O
 C7
O4
O4
O
GLY B:26 B:231 0.0 0.0 E -127.3 134.5 NA NA NA
3flg 1 Q9UBC3 100.0 1e-103 X-RAY
 2009-03-31 GLY A:27 A:27 1.0 0.013 E -129.3 147.5 1.0 0.013 0.0 HOH
 3.542
 CA
 O
3qkj 1 Q59H79 100.0 1e-103 X-RAY
 2011-03-09 GLY A:27 A:231 0.0 0.0 E -118.8 139.8 0.0 0.0 0.0 BTB
HOH
 5.022
2.836
 O
O
 O1
O
GLY B:27 B:231 0.0 0.0 E -120.4 138.2 NA NA NA
GLY C:27 C:231 1.0 0.013 E -124.6 138.5 NA NA NA
GLY D:27 D:231 0.0 0.0 E -122.9 139.3 NA NA NA
6r3e 1 Q9UBC3 99.28 2e-93 X-RAY
 2020-04-08 GLY A:17 A:231 0.0 0.0 E -120.7 139.7 0.0 0.0 0.0 96H
HOH
 5.472
2.984
 O
O
 O01
O
GLY B:17 B:231 0.0 0.0 E -137.9 152.1 NA NA NA
1khc 1 O88509 93.75 1e-92 X-RAY
 2002-02-27 GLY A:20 A:238 0.0 0.0 E -140.5 154.3 0.0 0.0 0.0 HOH
 3.470
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ubc3-f1 1 Q9UBC3 100.0 0.0 GLY A:231 A:231 0.0 0.0 E -119.8 147.4