Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 31376759 . C A CCDS13204.1:NM_175850.2:c.790Cga>Aga_NP_787046.1:p.264R>R Homo sapiens DNA methyltransferase 3 beta (DNMT3B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6pa7 8 Q9UBC3 97.31 0.0 EM
 2020-06-17 ARG L:252 NA:NA DO NA DO DO DO NA NA NA
ARG N:252 NA:NA DO NA DO DO DO NA NA NA
5ciu 1 Q9UBC3 100.0 1e-103 X-RAY
 2016-03-30 ARG A:47 A:252 124.0 0.551 -154.7 163.9 123.0 0.547 0.004 D:None:0.004
 HOH
 2.651
 NE
 O
ARG B:47 B:252 130.0 0.578 -154.4 161.8 NA NA NA
5nr3 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 127.0 0.564 -142.3 162.3 127.0 0.564 0.0 SO4
SO4
HOH
 2.435
9.151
2.688
 NH2
NH1
NE
 O4
O2
O
ARG B:47 B:252 132.0 0.587 -162.7 155.3 NA NA NA
5nrr 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 129.0 0.573 -155.9 167.6 31.0 0.138 0.435 B:Q9UBC3:0.436
 SO4
HOH
 2.615
2.640
 NH2
NE
 O1
O
ARG B:47 B:252 134.0 0.596 -157.8 167.7 134.0 0.596 0.0 SO4
HOH
 2.847
2.839
 NH1
NE
 O2
O
5nrs 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 125.0 0.556 -159.9 163.2 43.0 0.191 0.365 B:Q9UBC3:0.364
 SO4
962
HOH
 2.856
9.660
2.516
 NH2
CD
NE
 O4
O8
O
ARG B:47 B:252 147.0 0.653 -57.9 156.4 147.0 0.653 0.0 SO4
HOH
 2.757
2.857
 NH1
NE
 O2
O
5nrv 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-06-13 ARG A:47 D:252 127.0 0.564 -160.1 163.4 42.0 0.187 0.377 B:Q9UBC3:0.378
 96K
SO4
SO4
SO4
96K
SO4
HOH
 7.888
8.898
2.380
2.994
9.977
8.130
2.651
 NH2
NH1
NH1
NH1
CD
C
NE
 O8
O3
O4
O4
C10
O2
O
ARG B:47 A:252 128.0 0.569 -164.6 160.8 128.0 0.569 0.0 96K
SO4
SO4
HOH
 7.553
8.968
2.441
2.534
 NH2
NH1
NH1
NE
 O8
O1
O2
O
5nv0 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 129.0 0.573 -158.0 165.7 46.0 0.204 0.369 B:Q9UBC3:0.369
 SO4
SO4
HOH
 2.557
2.939
2.647
 NH2
NH1
NE
 O2
O1
O
ARG B:47 B:252 140.0 0.622 -122.9 166.8 140.0 0.622 0.0 SO4
HOH
 2.603
2.879
 NH1
NH1
 O1
O
5nv2 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 130.0 0.578 -154.8 161.7 44.0 0.196 0.382 B:Q9UBC3:0.382
 SO4
SO4
9AE
HOH
 2.619
2.605
8.913
2.767
 NH1
NH1
CB
NE
 O4
O1
C7
O
ARG B:47 B:252 144.0 0.64 -70.9 163.0 144.0 0.64 0.0 SO4
HOH
 2.253
2.842
 NH1
NE
 O1
O
5nv7 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 125.0 0.556 -169.6 162.9 125.0 0.556 0.0 SO4
HOH
 2.726
4.073
 NH2
NH2
 O3
O
ARG B:47 B:252 138.0 0.613 -130.5 162.5 NA NA NA
5nvo 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:47 A:252 124.0 0.551 -141.0 165.3 124.0 0.551 0.0 SO4
SO4
HOH
 2.511
2.443
2.622
 NH2
NH1
NE
 O3
O3
O
ARG B:47 B:252 144.0 0.64 -82.3 161.5 NA NA NA
3flg 1 Q9UBC3 100.0 1e-103 X-RAY
 2009-03-31 ARG A:48 A:48 84.0 NA -158.4 159.4 84.0 NA NA HOH
 2.850
 CD
 O
3qkj 1 Q59H79 100.0 1e-103 X-RAY
 2011-03-09 ARG A:48 A:252 128.0 0.569 -151.4 167.4 128.0 0.569 0.0 HOH
 4.998
 O
 O
ARG B:48 B:252 130.0 0.578 -151.1 167.6 NA NA NA
ARG C:48 C:252 133.0 0.591 -153.3 166.5 NA NA NA
ARG D:48 D:252 132.0 0.587 -153.7 167.0 NA NA NA
6r3e 1 Q9UBC3 99.28 2e-93 X-RAY
 2020-04-08 ARG A:38 A:252 124.0 0.551 -167.0 157.5 124.0 0.551 0.0 SO4
HOH
 2.843
2.583
 NH1
NE
 O4
O
ARG B:38 B:252 139.0 0.618 -162.8 160.8 NA NA NA
1khc 1 O88509 93.75 1e-92 X-RAY
 2002-02-27 ARG A:41 A:259 106.0 0.471 -142.3 171.3 106.0 0.471 0.0 HOH
 5.048
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ubc3-f1 1 Q9UBC3 100.0 0.0 ARG A:252 A:252 130.0 0.578 -58.5 150.9