Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 31376785 . G A CCDS13204.1:NM_175850.2:c.816tgG>tgA_NP_787046.1:p.272W>* Homo sapiens DNA methyltransferase 3 beta (DNMT3B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6pa7 8 Q9UBC3 97.31 0.0 EM
 2020-06-17 TRP L:260 NA:NA DO NA DO DO DO NA NA NA
TRP N:260 NA:NA DO NA DO DO DO NA NA NA
5ciu 1 Q9UBC3 100.0 1e-103 X-RAY
 2016-03-30 TRP A:55 A:260 9.0 0.035 E -80.9 134.3 2.0 0.008 0.027 D:None:0.027
 HOH
 4.303
 CD1
 O
TRP B:55 B:260 9.0 0.035 E -78.4 133.3 NA NA NA
5nr3 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 2.0 0.008 E -73.7 132.5 2.0 0.008 0.0 SO4
SO4
HOH
 4.003
6.480
4.284
 CH2
CZ3
CD1
 O4
O2
O
TRP B:55 B:260 4.0 0.016 E -80.9 133.6 NA NA NA
5nrr 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 3.0 0.012 E -82.7 134.5 3.0 0.012 0.0 96E
SO4
HOH
 9.648
3.990
4.043
 CZ3
CH2
CD1
 O01
O1
O
TRP B:55 B:260 2.0 0.008 E -82.9 133.0 2.0 0.008 0.0 96E
SO4
HOH
 9.634
4.044
4.002
 CZ3
CH2
CD1
 O01
O4
O
5nrs 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 4.0 0.016 E -79.6 135.5 4.0 0.016 0.0 SO4
962
HOH
 4.069
9.886
4.113
 CH2
CZ3
CZ3
 O4
O12
O
TRP B:55 B:260 2.0 0.008 E -83.6 134.9 2.0 0.008 0.0 SO4
962
HOH
 4.428
9.778
4.305
 CH2
CZ3
CZ3
 O3
O12
O
5nrv 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-06-13 TRP A:55 D:260 4.0 0.016 E -76.5 131.1 4.0 0.016 0.0 96K
SO4
SO4
SO4
HOH
 6.378
6.968
3.803
5.962
4.186
 CZ3
CZ3
CH2
CH2
CD1
 C7
O2
O2
O4
O
TRP B:55 A:260 3.0 0.012 E -80.3 133.6 3.0 0.012 0.0 96K
SO4
SO4
HOH
 6.306
6.687
3.430
4.168
 CZ3
CZ3
CH2
CD1
 C7
O4
O3
O
5nv0 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 3.0 0.012 E -82.9 135.4 3.0 0.012 0.0 9AH
SO4
SO4
HOH
 9.803
4.030
5.764
4.029
 CZ3
CH2
CH2
CD1
 C12
O2
O1
O
TRP B:55 B:260 2.0 0.008 E -85.0 135.5 2.0 0.008 0.0 9AH
SO4
HOH
 9.786
4.142
4.985
 CZ3
CH2
CZ2
 C9
O4
O
5nv2 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 2.0 0.008 E -77.7 132.6 2.0 0.008 0.0 SO4
SO4
HOH
 4.153
5.300
4.154
 CH2
CH2
CZ3
 O2
O1
O
TRP B:55 B:260 2.0 0.008 E -79.6 133.4 2.0 0.008 0.0 SO4
HOH
 3.787
4.253
 CH2
CZ3
 O4
O
5nv7 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 5.0 0.02 E -76.5 133.8 5.0 0.02 0.0 SO4
HOH
 3.989
4.091
 CH2
CZ3
 O3
O
TRP B:55 B:260 2.0 0.008 E -86.3 136.2 NA NA NA
5nvo 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 TRP A:55 A:260 6.0 0.024 E -81.9 134.8 6.0 0.024 0.0 SO4
SO4
HOH
 4.143
5.229
4.164
 CH2
CH2
CZ3
 O3
O3
O
TRP B:55 B:260 4.0 0.016 E -85.2 131.7 NA NA NA
3flg 1 Q9UBC3 100.0 1e-103 X-RAY
 2009-03-31 TRP A:56 A:56 17.0 0.067 E -82.9 134.2 17.0 0.067 0.0 HOH
 3.668
 CZ3
 O
3qkj 1 Q59H79 100.0 1e-103 X-RAY
 2011-03-09 TRP A:56 A:260 7.0 0.027 E -85.2 136.3 7.0 0.027 0.0 HOH
 4.148
 CD1
 O
TRP B:56 B:260 9.0 0.035 E -85.5 136.1 NA NA NA
TRP C:56 C:260 4.0 0.016 E -85.8 135.7 NA NA NA
TRP D:56 D:260 3.0 0.012 E -86.5 134.7 NA NA NA
6r3e 1 Q9UBC3 99.28 2e-93 X-RAY
 2020-04-08 TRP A:46 A:260 4.0 0.016 E -72.6 135.9 4.0 0.016 0.0 SO4
HOH
 4.172
4.025
 CH2
CD1
 O1
O
TRP B:46 B:260 2.0 0.008 E -83.0 137.8 NA NA NA
1khc 1 O88509 93.75 1e-92 X-RAY
 2002-02-27 TRP A:49 A:267 18.0 0.071 E -97.7 133.1 18.0 0.071 0.0 HOH
 3.898
 CZ3
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ubc3-f1 1 Q9UBC3 100.0 0.0 TRP A:260 A:260 11.0 0.043 E -77.1 127.9