Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 31379479 . G A CCDS13204.1:NM_175850.2:c.922Gtc>Atc_NP_787046.1:p.308V>I Homo sapiens DNA methyltransferase 3 beta (DNMT3B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6pa7 8 Q9UBC3 97.31 0.0 EM
 2020-06-17 VAL L:296 NA:NA DO NA DO DO DO NA NA NA
VAL N:296 NA:NA DO NA DO DO DO NA NA NA
5ciu 1 Q9UBC3 100.0 1e-103 X-RAY
 2016-03-30 VAL A:91 A:296 78.0 0.503 H -65.8 -30.0 78.0 0.503 0.0 HOH
 3.166
 CG1
 O
VAL B:91 B:296 70.0 0.452 H -76.9 -30.1 NA NA NA
5nr3 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 66.0 0.426 H -63.9 -32.1 66.0 0.426 0.0 95E
HOH
 7.497
3.361
 C
N
 C2
O
VAL B:91 B:296 77.0 0.497 H -64.6 -29.4 NA NA NA
5nrr 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 102.0 0.658 H -60.0 -30.1 102.0 0.658 0.0 96E
HOH
 6.221
3.020
 N
N
 O13
O
VAL B:91 B:296 89.0 0.574 H -60.4 -30.8 89.0 0.574 0.0 96E
HOH
 6.192
2.991
 N
N
 O13
O
5nrs 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 75.0 0.484 H -63.4 -30.7 75.0 0.484 0.0 962
HOH
 8.395
3.116
 C
CG1
 C9
O
VAL B:91 B:296 69.0 0.445 H -64.9 -27.6 69.0 0.445 0.0 962
HOH
 8.074
5.538
 C
O
 O8
O
5nrv 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-06-13 VAL A:91 D:296 67.0 0.432 H -65.3 -28.6 67.0 0.432 0.0 96K
SO4
HOH
 7.591
2.427
3.741
 C
N
CG2
 C14
O2
O
VAL B:91 A:296 72.0 0.465 H -62.0 -28.4 72.0 0.465 0.0 SO4
96K
HOH
 7.446
7.328
2.956
 O
C
N
 O3
C11
O
5nv0 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 77.0 0.497 H -56.6 -34.5 77.0 0.497 0.0 9AH
HOH
 7.827
3.055
 C
CG1
 C5
O
VAL B:91 B:296 65.0 0.419 H -61.9 -29.3 65.0 0.419 0.0 SO4
9AH
HOH
 8.211
7.524
3.010
 CG1
C
N
 O4
N6
O
5nv2 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 69.0 0.445 H -62.0 -27.4 69.0 0.445 0.0 9AE
HOH
 7.675
3.457
 C
N
 C8
O
VAL B:91 B:296 72.0 0.465 H -65.4 -27.3 72.0 0.465 0.0 SO4
9AE
HOH
 8.085
7.112
5.479
 O
C
O
 O3
C8
O
5nv7 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 95.0 0.613 H -61.5 -32.9 95.0 0.613 0.0 9AK
HOH
 7.505
3.250
 C
CG1
 O9
O
VAL B:91 B:296 90.0 0.581 H -63.7 -29.4 NA NA NA
5nvo 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 VAL A:91 A:296 72.0 0.465 H -60.5 -33.0 72.0 0.465 0.0 HOH
 3.189
 CG1
 O
VAL B:91 B:296 80.0 0.516 H -65.9 -31.1 NA NA NA
3flg 1 Q9UBC3 100.0 1e-103 X-RAY
 2009-03-31 VAL A:92 A:92 74.0 0.477 H -62.3 -29.4 74.0 0.477 0.0 HOH
 2.944
 N
 O
3qkj 1 Q59H79 100.0 1e-103 X-RAY
 2011-03-09 VAL A:92 A:296 99.0 0.639 H -63.8 -32.3 99.0 0.639 0.0 HOH
 3.180
 N
 O
VAL B:92 B:296 99.0 0.639 H -63.1 -33.1 NA NA NA
VAL C:92 C:296 91.0 0.587 H -64.3 -32.1 NA NA NA
VAL D:92 D:296 91.0 0.587 H -64.0 -32.5 NA NA NA
6r3e 1 Q9UBC3 99.28 2e-93 X-RAY
 2020-04-08 VAL A:82 A:296 90.0 0.581 H -65.2 -28.6 90.0 0.581 0.0 96H
HOH
 8.406
2.530
 C
N
 C12
O
VAL B:82 B:296 71.0 0.458 H -78.9 -24.2 NA NA NA
1khc 1 O88509 93.75 1e-92 X-RAY
 2002-02-27 VAL A:85 A:303 97.0 0.626 H -65.9 -37.5 97.0 0.626 0.0 HOH
 2.962
 CG2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ubc3-f1 1 Q9UBC3 100.0 0.0 VAL A:296 A:296 86.0 0.555 H -57.8 -34.8