Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 31379489 . G A CCDS13204.1:NM_175850.2:c.932cGa>cAa_NP_787046.1:p.311R>Q Homo sapiens DNA methyltransferase 3 beta (DNMT3B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6pa7 8 Q9UBC3 97.31 0.0 EM
 2020-06-17 ARG L:299 NA:NA DO NA DO DO DO NA NA NA
ARG N:299 NA:NA DO NA DO DO DO NA NA NA
5ciu 1 Q9UBC3 100.0 1e-103 X-RAY
 2016-03-30 ARG A:94 A:299 89.0 0.396 H -66.7 -40.9 89.0 0.396 0.0 HOH
 6.070
 CD
 O
ARG B:94 B:299 98.0 0.436 H -74.8 -46.6 NA NA NA
5nr3 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 45.0 0.2 H -59.8 -40.1 45.0 0.2 0.0 95E
HOH
 8.836
2.974
 N
NH2
 C7
O
ARG B:94 B:299 43.0 0.191 H -67.3 -41.1 NA NA NA
5nrr 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 50.0 0.222 H -64.5 -37.2 50.0 0.222 0.0 96E
HOH
 8.511
2.840
 N
NH2
 O13
O
ARG B:94 B:299 46.0 0.204 H -64.5 -39.7 46.0 0.204 0.0 96E
HOH
 8.484
2.862
 N
NH1
 O13
O
5nrs 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 48.0 0.213 H -66.8 -39.0 48.0 0.213 0.0 962
HOH
 9.407
7.058
 N
N
 C9
O
ARG B:94 B:299 47.0 0.209 H -66.2 -41.1 47.0 0.209 0.0 SO4
962
HOH
 9.834
8.826
6.375
 O
N
N
 O3
O8
O
5nrv 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-06-13 ARG A:94 D:299 47.0 0.209 H -67.5 -38.9 47.0 0.209 0.0 96K
SO4
HOH
 8.565
5.922
2.850
 N
N
NH2
 C14
O2
O
ARG B:94 A:299 47.0 0.209 H -63.4 -43.1 47.0 0.209 0.0 SO4
SO4
96K
HOH
 9.384
9.278
8.398
2.414
 O
C
N
NH2
 O3
O3
C11
O
5nv0 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 48.0 0.213 H -66.1 -39.2 48.0 0.213 0.0 9AH
HOH
 8.652
3.730
 N
NH1
 C5
O
ARG B:94 B:299 47.0 0.209 H -66.8 -44.7 47.0 0.209 0.0 SO4
9AH
HOH
 10.000
8.424
5.258
 O
N
NH2
 O3
N6
O
5nv2 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 44.0 0.196 H -62.9 -40.7 44.0 0.196 0.0 9AE
HOH
 8.876
2.972
 N
NH2
 C8
O
ARG B:94 B:299 45.0 0.2 H -64.1 -42.7 45.0 0.2 0.0 SO4
SO4
9AE
HOH
 9.829
9.719
8.389
6.241
 O
C
N
N
 O3
O3
C8
O
5nv7 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 42.0 0.187 H -65.0 -44.7 42.0 0.187 0.0 9AK
HOH
 8.561
7.195
 N
N
 O9
O
ARG B:94 B:299 47.0 0.209 H -59.3 -42.3 NA NA NA
5nvo 1 Q9UBC3 100.0 1e-103 X-RAY
 2018-05-30 ARG A:94 A:299 50.0 0.222 H -66.7 -41.6 50.0 0.222 0.0 HOH
 2.680
 NH2
 O
ARG B:94 B:299 50.0 0.222 H -67.5 -38.3 NA NA NA
3flg 1 Q9UBC3 100.0 1e-103 X-RAY
 2009-03-31 ARG A:95 A:95 46.0 0.204 H -58.9 -45.1 46.0 0.204 0.0 HOH
 2.948
 NH2
 O
3qkj 1 Q59H79 100.0 1e-103 X-RAY
 2011-03-09 ARG A:95 A:299 90.0 0.4 H -61.1 -43.4 90.0 0.4 0.0 HOH
 4.109
 NH2
 O
ARG B:95 B:299 87.0 0.387 H -62.2 -41.4 NA NA NA
ARG C:95 C:299 50.0 0.222 H -59.7 -44.9 NA NA NA
ARG D:95 D:299 45.0 0.2 H -60.0 -45.0 NA NA NA
6r3e 1 Q9UBC3 99.28 2e-93 X-RAY
 2020-04-08 ARG A:85 A:299 46.0 0.204 H -65.2 -39.4 46.0 0.204 0.0 96H
HOH
 8.614
4.872
 N
NH2
 C12
O
ARG B:85 B:299 51.0 0.227 H -74.5 -43.5 NA NA NA
1khc 1 O88509 93.75 1e-92 X-RAY
 2002-02-27 ARG A:88 A:306 39.0 0.173 H -65.5 -41.7 39.0 0.173 0.0 UNX
HOH
 9.569
2.897
 O
NH1
 UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ubc3-f1 1 Q9UBC3 100.0 0.0 ARG A:299 A:299 36.0 0.16 H -65.1 -45.1