Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 33147050 . C A CCDS13237.1:NM_181509.2:c.91Cac>Aac_NP_852610.1:p.31H>N Homo sapiens microtubule associated protein 1 light chain 3 alpha (MAP1LC3A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5cx3 1 Q9H492 100.0 2e-87 X-RAY
 2016-08-03 HIS A:27 A:27 73.0 0.374 -135.5 67.5 57.0 0.292 0.082 E:Q9BQS8:0.082
 HOH
 2.679
 ND1
 O
HIS B:27 B:27 78.0 0.4 -134.6 68.3 NA NA NA
HIS C:27 C:27 66.0 0.338 -134.2 67.1 54.0 0.277 0.061 G:Q9BQS8:0.062
 HOH
 3.232
 C
 O
HIS D:27 D:27 54.0 0.277 -132.2 67.1 NA NA NA
3eci 1 Q9H492 100.0 3e-87 X-RAY
 2008-10-14 HIS A:28 A:27 97.0 0.497 -133.9 72.2 97.0 0.497 0.0
HIS B:28 B:27 86.0 0.441 -135.4 67.7 NA NA NA
7r9w 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 HIS A:29 A:27 76.0 0.39 -140.3 68.1 76.0 0.39 0.0 GOL
HOH
 8.436
2.847
 NE2
ND1
 O1
O
7r9z 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 HIS A:29 A:27 73.0 0.374 -136.4 65.4 73.0 0.374 0.0 2LZ
HOH
 9.671
2.961
 CD2
O
 F7
O
7ra0 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 HIS A:29 A:27 69.0 0.354 -138.1 66.7 69.0 0.354 0.0 2JI
HOH
 7.148
2.886
 CD2
O
 O17
O
3wan 1 O75143,Q9H492 100.0 1e-86 X-RAY
 2013-12-25 HIS A:42 A:43 84.0 0.431 -135.8 72.7 84.0 0.431 0.0 HOH
 2.907
 O
 O
HIS B:42 B:43 75.0 0.385 -140.7 74.9 75.0 0.385 0.0 HOH
 2.756
 ND1
 O
5dpr 1 Q9Y4G2,Q9H492 100.0 2e-86 X-RAY
 2016-09-28 HIS A:42 A:38 46.0 0.236 -127.8 78.5 46.0 0.236 0.0 HOH
 5.289
 HD2
 O
HIS B:42 B:38 51.0 0.262 -127.0 78.5 NA NA NA
HIS C:42 C:38 51.0 0.262 -126.6 78.4 NA NA NA
HIS D:42 D:38 50.0 0.256 -128.7 79.8 NA NA NA
3wal 1 Q9H492 100.0 3e-86 X-RAY
 2013-12-25 HIS A:31 A:31 80.0 0.41 S -142.2 68.4 80.0 0.41 0.0 HOH
 2.961
 O
 O
4zdv 1 Q9H492 100.0 3e-85 X-RAY
 2015-06-03 HIS A:39 A:27 48.0 0.246 -130.2 79.6 48.0 0.246 0.0 HOH
 2.815
 O
 O
6tbe 1 Q9H492 100.0 4e-83 X-RAY
 2020-11-18 HIS A:27 A:31 75.0 0.385 -140.9 66.7 75.0 0.385 0.0 NOV
HOH
 3.071
2.892
 NE2
ND1
 O4
O
5gmv 1 Q9GZQ8 82.5 3e-72 X-RAY
 2017-03-08 HIS A:27 B:27 68.0 0.349 -136.7 75.0 63.0 0.323 0.026 B:Q8IVP5:0.026
 HOH
 2.661
 ND1
 O
HIS C:27 A:27 66.0 0.338 -138.0 69.6 NA NA NA
5wrd 1 Q9CQV6 82.5 4e-72 X-RAY
 2017-03-29 HIS A:27 A:27 66.0 0.338 -139.7 78.1 66.0 0.338 0.0 HOH
 3.368
 C
 O
HIS B:27 B:27 76.0 0.39 -137.3 73.6 NA NA NA
5yiq 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 HIS A:27 A:27 73.0 0.374 -130.2 78.2 57.0 0.292 0.082 B:O70511:0.082
 ZN
HOH
 6.956
3.559
 N
C
 ZN
O
5yis 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 HIS A:27 A:27 47.0 0.241 -129.9 76.6 29.0 0.149 0.092 D:Q01484:0.092
 HOH
 2.676
 O
 O
HIS B:27 B:27 81.0 0.415 -138.6 79.0 NA NA NA
2k6q 1 Q62625 82.5 5e-72 NMR
 2008-09-02 HIS A:28 A:27 69.0 0.354 -117.5 80.5 41.0 0.21 0.144 B:O08623:0.144
2n9x 1 Q9GZQ8 82.5 5e-72 NMR
 2016-12-14 HIS A:27 A:27 108.0 0.554 -142.3 63.2 86.0 0.441 0.113 B:Q8IVP5:0.113
2zjd 1 Q9GZQ8 81.82 6e-72 X-RAY
 2008-06-03 HIS A:32 A:27 61.0 0.313 -131.4 68.6 61.0 0.313 0.0 HOH
 2.762
 ND1
 O
HIS C:32 C:27 79.0 0.405 -134.1 66.9 NA NA NA
5d94 1 Q9GZQ8 81.82 6e-72 X-RAY
 2015-10-21 HIS A:32 A:27 61.0 0.313 -130.7 89.4 46.0 0.236 0.077 B:Q9BQS8:0.077
 HOH
 2.754
 O
 O
2z0e 2 Q62625 82.5 6e-72 X-RAY
 2007-05-22 HIS B:32 B:27 69.0 0.354 -146.4 74.0 69.0 0.354 0.0 HOH
 2.688
 ND1
 O
2zzp 2 Q62625 82.5 6e-72 X-RAY
 2009-03-03 HIS B:32 B:27 67.0 0.344 -135.6 76.1 67.0 0.344 0.0 HOH
 2.928
 ND1
 O
1ugm 1 Q62625 82.5 1e-71 X-RAY
 2004-07-06 HIS A:32 A:27 71.0 0.364 -140.4 64.1 71.0 0.364 0.0 HOH
 2.926
 O
 O
2z0d 2 Q62625 82.5 1e-71 X-RAY
 2007-05-22 HIS B:32 B:27 68.0 0.349 -143.5 74.0 68.0 0.349 0.0 HOH
 5.259
 O
 O
5xad 1 Q9GZQ8 82.35 4e-71 X-RAY
 2017-07-12 HIS A:26 A:27 77.0 0.395 -137.2 74.3 77.0 0.395 0.0 HOH
 2.755
 O
 O
HIS B:26 B:27 62.0 0.318 -137.1 80.6 NA NA NA
6lan 1 Q8IVM0,Q9GZQ8 81.67 4e-71 X-RAY
 2020-09-30 HIS A:37 A:27 62.0 0.318 -141.3 74.2 62.0 0.318 0.0 HOH
 1.843
 HD1
 O
5xae 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 HIS A:49 A:25 68.0 0.349 -130.5 72.4 68.0 0.349 0.0 HOH
 7.561
 O
 O
HIS B:49 B:25 67.0 0.344 -127.7 70.5 66.0 0.338 0.006 A:Q9GZQ8:0.005
 HOH
 3.042
 O
 O
HIS C:49 C:25 50.0 0.256 -130.4 74.5 50.0 0.256 0.0 HOH
 8.659
 O
 O
HIS D:49 D:25 75.0 0.385 -130.1 72.1 75.0 0.385 0.0 HOH
 2.768
 NE2
 O
5xac 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 HIS A:37 A:27 59.0 0.303 -129.8 69.1 55.0 0.282 0.021 C:Q9GZQ8:0.01
B:Q9GZQ8:0.01
 HOH
 2.815
 O
 O
HIS B:37 B:27 72.0 0.369 -136.7 76.8 72.0 0.369 0.0 HOH
 2.701
 NE2
 O
HIS C:37 C:27 70.0 0.359 -132.8 73.4 51.0 0.262 0.097 D:Q9GZQ8:0.021
B:Q9GZQ8:0.072
 HOH
 3.559
 CA
 O
HIS D:37 D:27 71.0 0.364 -138.4 68.8 71.0 0.364 0.0 HOH
 2.875
 O
 O
5ms2 2 Q9GZQ8 82.35 1e-70 X-RAY
 2017-04-19 HIS B:32 B:27 89.0 0.456 S -146.5 69.1 89.0 0.456 0.0
3vtw 1 Q96CV9,Q9GZQ8 82.2 3e-70 X-RAY
 2013-06-26 HIS A:57 A:42 72.0 0.369 -146.5 62.0 72.0 0.369 0.0 HOH
 2.956
 O
 O
HIS B:57 B:42 71.0 0.364 -122.6 83.0 NA NA NA
HIS C:57 C:42 64.0 0.328 -150.2 77.1 NA NA NA
5v4k 1 Q9GZQ8 82.2 4e-70 X-RAY
 2017-05-17 HIS A:40 A:1027 65.0 0.333 -133.4 70.5 65.0 0.333 0.0 GOL
HOH
 3.096
2.873
 ND1
O
 C1
O
HIS B:40 B:1027 74.0 0.379 -132.3 73.7 74.0 0.379 0.0 SO4
HOH
 2.918
5.261
 ND1
O
 O4
O
6j04 1 Q9GZQ8 82.2 4e-70 X-RAY
 2019-11-06 HIS A:27 A:27 89.0 0.456 -136.5 65.9 89.0 0.456 0.0 HOH
 2.645
 O
 O
HIS B:27 B:27 66.0 0.338 -135.6 61.7 NA NA NA
HIS C:27 C:27 62.0 0.318 -133.0 71.2 NA NA NA
HIS D:27 D:27 78.0 0.4 -138.7 66.4 NA NA NA
3wao 1 O75143,Q9GZQ8 82.2 5e-70 X-RAY
 2013-12-25 HIS A:42 A:43 64.0 0.328 -126.7 66.6 64.0 0.328 0.0
HIS B:42 B:43 84.0 0.431 -134.3 83.9 NA NA NA
HIS C:42 C:43 65.0 0.333 -133.1 78.7 NA NA NA
HIS D:42 D:43 66.0 0.338 -127.3 71.1 NA NA NA
5dcn 1 Q9GZQ8 82.2 6e-70 X-RAY
 2016-03-09 HIS A:34 A:27 81.0 0.415 -129.2 76.6 81.0 0.415 0.0 SO4
HOH
 2.462
3.048
 ND1
O
 O2
O
3vtv 1 Q96CV9,Q9GZQ8 82.2 7e-70 X-RAY
 2013-06-26 HIS A:42 A:42 67.0 0.344 -141.3 78.5 67.0 0.344 0.0 HOH
 2.657
 O
 O
3x0w 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-01-14 HIS A:42 A:54 68.0 0.349 -144.9 60.5 68.0 0.349 0.0 HOH
 2.836
 NE2
 O
HIS B:42 B:54 67.0 0.344 -142.3 63.1 NA NA NA
4waa 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-09-09 HIS A:42 A:43 60.0 0.308 -145.1 70.8 60.0 0.308 0.0 HOH
 3.142
 CD2
 O
HIS B:42 B:43 76.0 0.39 -138.3 63.7 76.0 0.39 0.0 HOH
 3.537
 C
 O
3vtu 1 Q9GZQ8 82.2 9e-70 X-RAY
 2013-06-26 HIS A:31 A:31 74.0 0.379 -141.5 69.1 74.0 0.379 0.0 SO4
HOH
 2.761
2.825
 CD2
O
 O2
O
7elg 1 Q9GZQ8 82.2 9e-70 X-RAY
 2021-10-13 HIS A:31 A:31 73.0 0.374 -135.8 72.7 73.0 0.374 0.0 8Z6
HOH
 7.443
2.808
 CD2
O
 SAK
O
5ms5 1 Q5ZUV9,Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 HIS A:45 A:27 73.0 0.374 -134.8 64.8 73.0 0.374 0.0 SO4
HOH
 3.203
2.852
 ND1
NE2
 O1
O
HIS B:45 B:27 71.0 0.364 -136.9 67.7 NA NA NA
5ms6 1 Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 HIS A:45 A:27 82.0 0.421 -138.4 64.0 82.0 0.421 0.0 HOH
 3.418
 C
 O
HIS B:45 B:27 75.0 0.385 -140.0 63.8 NA NA NA
2lue 1 Q9GZQ8 82.61 2e-68 NMR
 2013-07-17 HIS A:27 A:27 82.0 0.421 -122.8 68.6 82.0 0.421 0.0
5w9a 2 Q9GZQ8 81.58 1e-66 X-RAY
 2018-10-10 HIS B:24 C:27 72.0 0.369 -120.6 81.5 24.0 0.123 0.246 D:Q0PF16:0.077
A:Q0PF16:0.221
HIS C:24 D:27 73.0 0.374 -118.7 82.3 25.0 0.128 0.246 D:Q0PF16:0.246

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h492-f1 1 Q9H492 100.0 8e-88 HIS A:27 A:27 68.0 0.349 -136.7 66.5
af-q9gzq8-f1 1 Q9GZQ8 82.5 1e-72 HIS A:27 A:27 65.0 0.333 -135.9 70.9
af-a6nce7-f1 1 A6NCE7 80.99 5e-71 HIS A:27 A:27 62.0 0.318 -135.9 70.3