Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 33147190 . G A CCDS13237.1:NM_181509.2:c.148Gtc>Atc_NP_852610.1:p.50V>I Homo sapiens microtubule associated protein 1 light chain 3 alpha (MAP1LC3A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5cx3 1 Q9H492 100.0 2e-87 X-RAY
 2016-08-03 VAL A:46 A:46 99.0 0.639 -82.7 149.1 43.0 0.277 0.362 E:Q9BQS8:0.361
 HOH
 5.300
 O
 O
VAL B:46 B:46 99.0 0.639 -85.5 145.9 NA NA NA
VAL C:46 C:46 68.0 0.439 -85.3 151.7 68.0 0.439 0.0 HOH
 3.807
 CA
 O
VAL D:46 D:46 91.0 0.587 -87.3 147.8 NA NA NA
3eci 1 Q9H492 100.0 3e-87 X-RAY
 2008-10-14 VAL A:47 A:46 97.0 0.626 -69.9 131.0 97.0 0.626 0.0
VAL B:47 B:46 104.0 0.671 -87.9 124.2 NA NA NA
7r9w 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 VAL A:48 A:46 96.0 0.619 -84.2 145.2 96.0 0.619 0.0 HOH
 2.348
 O
 O
7r9z 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 VAL A:48 A:46 109.0 0.703 -77.4 142.4 109.0 0.703 0.0 HOH
 3.876
 CG2
 O
7ra0 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 VAL A:48 A:46 100.0 0.645 -87.3 138.1 100.0 0.645 0.0 HOH
 2.989
 N
 O
3wan 1 O75143,Q9H492 100.0 1e-86 X-RAY
 2013-12-25 VAL A:61 A:62 92.0 0.594 -100.6 130.8 92.0 0.594 0.0 HOH
 2.750
 O
 O
VAL B:61 B:62 77.0 0.497 -78.3 148.9 77.0 0.497 0.0 HOH
 2.783
 O
 O
5dpr 1 Q9Y4G2,Q9H492 100.0 2e-86 X-RAY
 2016-09-28 VAL A:61 A:57 75.0 0.484 -85.9 146.8 75.0 0.484 0.0 HOH
 4.551
 HG23
 O
VAL B:61 B:57 67.0 0.432 -84.8 146.9 NA NA NA
VAL C:61 C:57 76.0 0.49 -85.3 146.8 NA NA NA
VAL D:61 D:57 84.0 0.542 -85.3 146.6 NA NA NA
3wal 1 Q9H492 100.0 3e-86 X-RAY
 2013-12-25 VAL A:50 A:50 96.0 0.619 -74.4 148.9 96.0 0.619 0.0 HOH
 3.883
 O
 O
4zdv 1 Q9H492 100.0 3e-85 X-RAY
 2015-06-03 VAL A:58 A:46 70.0 0.452 -76.6 134.6 70.0 0.452 0.0 HOH
 2.740
 O
 O
6tbe 1 Q9H492 100.0 4e-83 X-RAY
 2020-11-18 VAL A:46 A:50 96.0 0.619 -90.4 126.1 96.0 0.619 0.0 HOH
 2.909
 N
 O
5gmv 1 Q9GZQ8 82.5 3e-72 X-RAY
 2017-03-08 VAL A:46 B:46 95.0 0.613 -79.1 151.9 95.0 0.613 0.0 HOH
 2.967
 N
 O
VAL C:46 A:46 93.0 0.6 -90.2 139.3 NA NA NA
5wrd 1 Q9CQV6 82.5 4e-72 X-RAY
 2017-03-29 VAL A:46 A:46 107.0 0.69 -88.6 138.4 107.0 0.69 0.0 HOH
 6.082
 CG2
 O
VAL B:46 B:46 108.0 0.697 -79.6 141.3 NA NA NA
5yiq 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 VAL A:46 A:46 99.0 0.639 -69.5 139.8 99.0 0.639 0.0 HOH
 8.397
 N
 O
5yis 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 VAL A:46 A:46 95.0 0.613 -86.1 125.1 95.0 0.613 0.0 HOH
 5.172
 CG1
 O
VAL B:46 B:46 94.0 0.606 -83.8 134.8 NA NA NA
2k6q 1 Q62625 82.5 5e-72 NMR
 2008-09-02 VAL A:47 A:46 94.0 0.606 -73.6 115.1 94.0 0.606 0.0
2n9x 1 Q9GZQ8 82.5 5e-72 NMR
 2016-12-14 VAL A:46 A:46 111.0 0.716 -75.2 33.3 111.0 0.716 0.0
2zjd 1 Q9GZQ8 81.82 6e-72 X-RAY
 2008-06-03 VAL A:51 A:46 97.0 0.626 -79.3 139.4 97.0 0.626 0.0 HOH
 2.803
 O
 O
VAL C:51 C:46 98.0 0.632 -76.9 138.9 NA NA NA
5d94 1 Q9GZQ8 81.82 6e-72 X-RAY
 2015-10-21 VAL A:51 A:46 89.0 0.574 -90.7 137.0 89.0 0.574 0.0 HOH
 2.716
 O
 O
2z0e 2 Q62625 82.5 6e-72 X-RAY
 2007-05-22 VAL B:51 B:46 95.0 0.613 -101.9 146.2 95.0 0.613 0.0 HOH
 3.238
 CG1
 O
2zzp 2 Q62625 82.5 6e-72 X-RAY
 2009-03-03 VAL B:51 B:46 98.0 0.632 -97.9 139.4 98.0 0.632 0.0 HOH
 3.567
 CG1
 O
1ugm 1 Q62625 82.5 1e-71 X-RAY
 2004-07-06 VAL A:51 A:46 99.0 0.639 -91.9 147.0 99.0 0.639 0.0 HOH
 2.611
 N
 O
2z0d 2 Q62625 82.5 1e-71 X-RAY
 2007-05-22 VAL B:51 B:46 90.0 0.581 -99.8 140.1 90.0 0.581 0.0 HOH
 2.924
 N
 O
5xad 1 Q9GZQ8 82.35 4e-71 X-RAY
 2017-07-12 VAL A:45 A:46 96.0 0.619 -89.8 136.7 96.0 0.619 0.0 HOH
 4.226
 CG1
 O
VAL B:45 B:46 96.0 0.619 -95.0 134.5 NA NA NA
6lan 1 Q8IVM0,Q9GZQ8 81.67 4e-71 X-RAY
 2020-09-30 VAL A:56 A:46 29.0 0.187 -89.6 135.7 29.0 0.187 0.0 HOH
 1.939
 H
 O
5xae 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 VAL A:68 A:44 90.0 0.581 -79.6 144.6 22.0 0.142 0.439 B:Q9GZQ8:0.439
 HOH
 2.898
 N
 O
VAL B:68 B:44 87.0 0.561 -81.9 141.8 87.0 0.561 0.0 HOH
 3.233
 CG1
 O
VAL C:68 C:44 101.0 0.652 -85.7 144.7 101.0 0.652 0.0 HOH
 3.720
 CG1
 O
VAL D:68 D:44 93.0 0.6 -82.8 144.3 93.0 0.6 0.0 HOH
 2.951
 CG2
 O
5xac 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 VAL A:56 A:46 99.0 0.639 -86.0 139.6 99.0 0.639 0.0 HOH
 2.930
 N
 O
VAL B:56 B:46 63.0 0.406 -74.9 141.9 38.0 0.245 0.161 A:Q9GZQ8:0.161
 HOH
 2.796
 O
 O
VAL C:56 C:46 98.0 0.632 -77.2 144.3 98.0 0.632 0.0 HOH
 4.636
 CG1
 O
VAL D:56 D:46 99.0 0.639 -84.0 132.1 79.0 0.51 0.129 B:Q9GZQ8:0.129
 HOH
 2.714
 O
 O
5ms2 2 Q9GZQ8 82.35 1e-70 X-RAY
 2017-04-19 VAL B:51 B:46 89.0 0.574 -94.9 107.9 89.0 0.574 0.0
3vtw 1 Q96CV9,Q9GZQ8 82.2 3e-70 X-RAY
 2013-06-26 VAL A:76 A:61 89.0 0.574 -85.4 143.5 89.0 0.574 0.0 HOH
 3.381
 CG2
 O
VAL B:76 B:61 79.0 0.51 -78.7 142.3 NA NA NA
VAL C:76 C:61 93.0 0.6 -86.1 143.7 NA NA NA
5v4k 1 Q9GZQ8 82.2 4e-70 X-RAY
 2017-05-17 VAL A:59 A:1046 94.0 0.606 -94.3 147.4 94.0 0.606 0.0 HOH
 2.978
 N
 O
VAL B:59 B:1046 98.0 0.632 -94.1 135.6 98.0 0.632 0.0 HOH
 3.456
 CG1
 O
6j04 1 Q9GZQ8 82.2 4e-70 X-RAY
 2019-11-06 VAL A:46 A:46 97.0 0.626 -68.8 150.4 97.0 0.626 0.0 SO4
HOH
 4.705
3.395
 CG2
CG1
 O1
O
VAL B:46 B:46 89.0 0.574 -86.5 133.4 NA NA NA
VAL C:46 C:46 90.0 0.581 -85.9 134.3 NA NA NA
VAL D:46 D:46 94.0 0.606 -74.0 149.9 NA NA NA
3wao 1 O75143,Q9GZQ8 82.2 5e-70 X-RAY
 2013-12-25 VAL A:61 A:62 91.0 0.587 -75.0 153.2 91.0 0.587 0.0
VAL B:61 B:62 90.0 0.581 -80.1 125.7 NA NA NA
VAL C:61 C:62 75.0 0.484 -77.0 132.8 NA NA NA
VAL D:61 D:62 104.0 0.671 -67.2 134.5 NA NA NA
5dcn 1 Q9GZQ8 82.2 6e-70 X-RAY
 2016-03-09 VAL A:53 A:46 79.0 0.51 -102.3 148.6 79.0 0.51 0.0 SO4
HOH
 9.053
3.183
 CG2
CG2
 O4
O
3vtv 1 Q96CV9,Q9GZQ8 82.2 7e-70 X-RAY
 2013-06-26 VAL A:61 A:61 91.0 0.587 -84.4 145.2 91.0 0.587 0.0 HOH
 3.493
 CG2
 O
3x0w 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-01-14 VAL A:61 A:73 97.0 0.626 -90.6 138.8 97.0 0.626 0.0 HOH
 3.536
 CA
 O
VAL B:61 B:73 104.0 0.671 -96.3 140.5 NA NA NA
4waa 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-09-09 VAL A:61 A:62 86.0 0.555 -88.9 130.8 86.0 0.555 0.0 HOH
 3.742
 CG1
 O
VAL B:61 B:62 100.0 0.645 -88.1 137.9 100.0 0.645 0.0 HOH
 2.534
 O
 O
3vtu 1 Q9GZQ8 82.2 9e-70 X-RAY
 2013-06-26 VAL A:50 A:50 93.0 0.6 -77.3 146.3 93.0 0.6 0.0 SO4
SO4
HOH
 9.491
3.381
3.624
 CG2
O
CG2
 O3
O1
O
7elg 1 Q9GZQ8 82.2 9e-70 X-RAY
 2021-10-13 VAL A:50 A:50 93.0 0.6 -80.8 147.0 93.0 0.6 0.0 HOH
 3.382
 CG2
 O
5ms5 1 Q5ZUV9,Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 VAL A:64 A:46 93.0 0.6 -100.4 140.7 93.0 0.6 0.0 GOL
HOH
 8.553
3.364
 CG1
CG1
 C1
O
VAL B:64 B:46 97.0 0.626 -105.2 143.9 NA NA NA
5ms6 1 Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 VAL A:64 A:46 93.0 0.6 -104.7 147.0 93.0 0.6 0.0 HOH
 3.756
 CA
 O
VAL B:64 B:46 92.0 0.594 -107.8 144.2 NA NA NA
2lue 1 Q9GZQ8 82.61 2e-68 NMR
 2013-07-17 VAL A:46 A:46 93.0 0.6 -87.1 140.5 93.0 0.6 0.0
5w9a 2 Q9GZQ8 81.58 1e-66 X-RAY
 2018-10-10 VAL B:43 C:46 101.0 0.652 -99.8 122.2 101.0 0.652 0.0
VAL C:43 D:46 94.0 0.606 -100.6 121.9 94.0 0.606 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h492-f1 1 Q9H492 100.0 8e-88 VAL A:46 A:46 76.0 0.49 -83.3 130.9
af-q9gzq8-f1 1 Q9GZQ8 82.5 1e-72 VAL A:46 A:46 66.0 0.426 -86.1 131.3
af-a6nce7-f1 1 A6NCE7 80.99 5e-71 VAL A:46 A:46 68.0 0.439 -85.5 132.8