Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 33147203 . C A CCDS13237.1:NM_181509.2:c.161aCc>aAc_NP_852610.1:p.54T>N Homo sapiens microtubule associated protein 1 light chain 3 alpha (MAP1LC3A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5cx3 1 Q9H492 100.0 2e-87 X-RAY
 2016-08-03 THR A:50 A:50 46.0 0.329 S -94.9 -36.6 3.0 0.021 0.308 E:Q9BQS8:0.307
 HOH
 2.999
 N
 O
THR B:50 B:50 40.0 0.286 S -93.8 -37.4 NA NA NA
THR C:50 C:50 31.0 0.221 -100.2 -35.6 22.0 0.157 0.064 G:Q9BQS8:0.064
 HOH
 5.199
 OG1
 O
THR D:50 D:50 34.0 0.243 S -99.7 -33.8 NA NA NA
3eci 1 Q9H492 100.0 3e-87 X-RAY
 2008-10-14 THR A:51 A:50 34.0 0.243 -119.8 -25.6 34.0 0.243 0.0
THR B:51 B:50 52.0 0.371 -102.8 -10.0 NA NA NA
7r9w 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 THR A:52 A:50 41.0 0.293 S -113.4 -26.3 41.0 0.293 0.0 JO4
GOL
HOH
 7.192
7.969
3.198
 O
C
N
 C11
O1
O
7r9z 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 THR A:52 A:50 43.0 0.307 S -112.0 -31.6 43.0 0.307 0.0 2LZ
HOH
 9.099
2.942
 O
N
 C12
O
7ra0 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 THR A:52 A:50 46.0 0.329 S -115.7 -29.4 46.0 0.329 0.0 2JI
HOH
 9.062
3.027
 O
N
 C1
O
3wan 1 O75143,Q9H492 100.0 1e-86 X-RAY
 2013-12-25 THR A:65 A:66 23.0 0.164 -112.3 2.4 23.0 0.164 0.0 HOH
 2.603
 OG1
 O
THR B:65 B:66 2.0 0.014 -112.8 -0.5 2.0 0.014 0.0 HOH
 2.642
 OG1
 O
5dpr 1 Q9Y4G2,Q9H492 100.0 2e-86 X-RAY
 2016-09-28 THR A:65 A:61 26.0 0.186 -117.2 -38.9 26.0 0.186 0.0 HOH
 3.606
 OG1
 O
THR B:65 B:61 27.0 0.193 -116.1 -39.3 NA NA NA
THR C:65 C:61 12.0 0.086 -115.8 -39.8 NA NA NA
THR D:65 D:61 23.0 0.164 -116.9 -39.6 NA NA NA
3wal 1 Q9H492 100.0 3e-86 X-RAY
 2013-12-25 THR A:54 A:54 37.0 0.264 S -111.8 -39.3 37.0 0.264 0.0 HOH
 2.893
 N
 O
4zdv 1 Q9H492 100.0 3e-85 X-RAY
 2015-06-03 THR A:62 A:50 31.0 0.221 S -117.5 -39.0 31.0 0.221 0.0 HOH
 2.754
 N
 O
6tbe 1 Q9H492 100.0 4e-83 X-RAY
 2020-11-18 THR A:50 A:54 40.0 0.286 S -111.3 -38.0 40.0 0.286 0.0 NOV
HOH
 7.332
5.608
 O
C
 C25
O
5gmv 1 Q9GZQ8 82.5 3e-72 X-RAY
 2017-03-08 THR A:50 B:50 44.0 0.314 S -104.2 -41.4 44.0 0.314 0.0 HOH
 3.561
 CA
 O
THR C:50 A:50 37.0 0.264 S -107.8 -35.0 NA NA NA
5wrd 1 Q9CQV6 82.5 4e-72 X-RAY
 2017-03-29 THR A:50 A:50 34.0 0.243 -114.4 -34.3 34.0 0.243 0.0 HOH
 3.856
 OG1
 O
THR B:50 B:50 29.0 0.207 -86.7 -30.1 NA NA NA
5yiq 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 THR A:50 A:50 38.0 0.271 -105.2 -45.3 28.0 0.2 0.071 B:O70511:0.071
5yis 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 THR A:50 A:50 50.0 0.357 -119.8 -19.2 50.0 0.357 0.0 HOH
 4.340
 OG1
 O
THR B:50 B:50 27.0 0.193 -102.5 -33.9 NA NA NA
2k6q 1 Q62625 82.5 5e-72 NMR
 2008-09-02 THR A:51 A:50 43.0 0.307 S -102.7 -33.7 43.0 0.307 0.0
2n9x 1 Q9GZQ8 82.5 5e-72 NMR
 2016-12-14 THR A:50 A:50 6.0 0.043 61.6 -45.9 4.0 0.029 0.014 B:Q8IVP5:0.014
2zjd 1 Q9GZQ8 81.82 6e-72 X-RAY
 2008-06-03 THR A:55 A:50 37.0 0.264 -121.9 -45.1 37.0 0.264 0.0 HOH
 3.058
 N
 O
THR C:55 C:50 37.0 0.264 S -118.6 -41.4 NA NA NA
5d94 1 Q9GZQ8 81.82 6e-72 X-RAY
 2015-10-21 THR A:55 A:50 18.0 0.129 -105.2 -1.5 8.0 0.057 0.072 B:Q9BQS8:0.071
 HOH
 2.671
 OG1
 O
2z0e 2 Q62625 82.5 6e-72 X-RAY
 2007-05-22 THR B:55 B:50 28.0 0.2 -121.1 -11.4 28.0 0.2 0.0 HOH
 3.019
 N
 O
2zzp 2 Q62625 82.5 6e-72 X-RAY
 2009-03-03 THR B:55 B:50 26.0 0.186 -122.6 -1.7 26.0 0.186 0.0 HOH
 2.791
 OG1
 O
1ugm 1 Q62625 82.5 1e-71 X-RAY
 2004-07-06 THR A:55 A:50 35.0 0.25 S -109.0 -44.7 35.0 0.25 0.0 HOH
 2.831
 N
 O
2z0d 2 Q62625 82.5 1e-71 X-RAY
 2007-05-22 THR B:55 B:50 20.0 0.143 -108.9 -0.4 20.0 0.143 0.0 HOH
 3.672
 CG2
 O
5xad 1 Q9GZQ8 82.35 4e-71 X-RAY
 2017-07-12 THR A:49 A:50 43.0 0.307 -120.4 -7.2 29.0 0.207 0.1 C:A0A129J378:0.1
 HOH
 2.746
 OG1
 O
THR B:49 B:50 48.0 0.343 -120.4 -8.9 NA NA NA
6lan 1 Q8IVM0,Q9GZQ8 81.67 4e-71 X-RAY
 2020-09-30 THR A:60 A:50 46.0 0.329 -121.1 -6.8 46.0 0.329 0.0 HOH
 2.660
 HG22
 O
5xae 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 THR A:72 A:48 31.0 0.221 S -119.6 -33.7 31.0 0.221 0.0 HOH
 2.695
 OG1
 O
THR B:72 B:48 32.0 0.229 S -117.3 -34.0 32.0 0.229 0.0 HOH
 3.584
 CA
 O
THR C:72 C:48 39.0 0.279 S -124.5 -30.1 39.0 0.279 0.0 HOH
 2.934
 CG2
 O
THR D:72 D:48 34.0 0.243 S -117.6 -31.5 34.0 0.243 0.0 HOH
 2.714
 N
 O
5xac 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 THR A:60 A:50 39.0 0.279 S -113.6 -35.9 39.0 0.279 0.0 HOH
 2.773
 OG1
 O
THR B:60 B:50 27.0 0.193 S -107.1 -34.3 27.0 0.193 0.0 HOH
 2.924
 OG1
 O
THR C:60 C:50 52.0 0.371 -116.9 -12.2 52.0 0.371 0.0 HOH
 2.839
 N
 O
THR D:60 D:50 36.0 0.257 -125.4 -7.8 36.0 0.257 0.0 HOH
 2.649
 OG1
 O
5ms2 2 Q9GZQ8 82.35 1e-70 X-RAY
 2017-04-19 THR B:55 B:50 22.0 0.157 -77.8 -62.6 22.0 0.157 0.0
3vtw 1 Q96CV9,Q9GZQ8 82.2 3e-70 X-RAY
 2013-06-26 THR A:80 A:65 34.0 0.243 S -118.9 -41.5 34.0 0.243 0.0 HOH
 2.932
 N
 O
THR B:80 B:65 32.0 0.229 -100.8 -30.1 NA NA NA
THR C:80 C:65 27.0 0.193 -127.8 -35.2 NA NA NA
5v4k 1 Q9GZQ8 82.2 4e-70 X-RAY
 2017-05-17 THR A:63 A:1050 43.0 0.307 -123.9 -10.1 43.0 0.307 0.0 HOH
 2.916
 N
 O
THR B:63 B:1050 59.0 0.421 -115.1 -38.8 59.0 0.421 0.0 HOH
 3.608
 OG1
 O
6j04 1 Q9GZQ8 82.2 4e-70 X-RAY
 2019-11-06 THR A:50 A:50 34.0 0.243 -112.9 -28.7 34.0 0.243 0.0 HOH
 2.772
 N
 O
THR B:50 B:50 30.0 0.214 -108.4 -36.4 NA NA NA
THR C:50 C:50 33.0 0.236 -122.2 -25.9 NA NA NA
THR D:50 D:50 34.0 0.243 S -111.2 -37.8 NA NA NA
3wao 1 O75143,Q9GZQ8 82.2 5e-70 X-RAY
 2013-12-25 THR A:65 A:66 35.0 0.25 S -119.3 -37.1 35.0 0.25 0.0
THR B:65 B:66 30.0 0.214 S -123.0 -28.8 NA NA NA
THR C:65 C:66 39.0 0.279 -114.0 -38.1 NA NA NA
THR D:65 D:66 45.0 0.321 S -113.0 -43.9 NA NA NA
5dcn 1 Q9GZQ8 82.2 6e-70 X-RAY
 2016-03-09 THR A:57 A:50 37.0 0.264 S -122.0 -38.2 37.0 0.264 0.0 SO4
HOH
 8.868
2.850
 CG2
N
 O1
O
3vtv 1 Q96CV9,Q9GZQ8 82.2 7e-70 X-RAY
 2013-06-26 THR A:65 A:65 31.0 0.221 S -125.7 -39.1 31.0 0.221 0.0 HOH
 2.963
 N
 O
3x0w 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-01-14 THR A:65 A:77 43.0 0.307 -129.2 -27.7 43.0 0.307 0.0 HOH
 4.707
 OG1
 O
THR B:65 B:77 37.0 0.264 -130.9 -27.1 NA NA NA
4waa 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-09-09 THR A:65 A:66 30.0 0.214 -119.6 0.7 30.0 0.214 0.0 HOH
 3.017
 N
 O
THR B:65 B:66 44.0 0.314 S -106.0 -29.7 44.0 0.314 0.0 HOH
 2.750
 OG1
 O
3vtu 1 Q9GZQ8 82.2 9e-70 X-RAY
 2013-06-26 THR A:54 A:54 38.0 0.271 S -111.4 -40.3 38.0 0.271 0.0 SO4
HOH
 2.870
3.204
 N
OG1
 O1
O
7elg 1 Q9GZQ8 82.2 9e-70 X-RAY
 2021-10-13 THR A:54 A:54 34.0 0.243 S -110.3 -43.6 34.0 0.243 0.0 8Z6
HOH
 7.605
2.382
 N
OG1
 CAA
O
5ms5 1 Q5ZUV9,Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 THR A:68 A:50 33.0 0.236 -102.6 -6.6 33.0 0.236 0.0 SO4
GOL
HOH
 5.069
3.162
3.465
 OG1
N
CG2
 O2
C3
O
THR B:68 B:50 34.0 0.243 -106.3 -7.3 NA NA NA
5ms6 1 Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 THR A:68 A:50 29.0 0.207 -100.2 -15.2 29.0 0.207 0.0 HOH
 3.028
 CG2
 O
THR B:68 B:50 28.0 0.2 -108.7 -12.2 NA NA NA
2lue 1 Q9GZQ8 82.61 2e-68 NMR
 2013-07-17 THR A:50 A:50 37.0 0.264 S -127.2 -36.3 37.0 0.264 0.0
5w9a 2 Q9GZQ8 81.58 1e-66 X-RAY
 2018-10-10 THR B:47 C:50 30.0 0.214 -118.6 -23.9 30.0 0.214 0.0
THR C:47 D:50 39.0 0.279 -116.5 -23.4 39.0 0.279 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h492-f1 1 Q9H492 100.0 8e-88 THR A:50 A:50 29.0 0.207 -104.3 -13.8
af-q9gzq8-f1 1 Q9GZQ8 82.5 1e-72 THR A:50 A:50 29.0 0.207 -103.3 -16.1
af-a6nce7-f1 1 A6NCE7 80.99 5e-71 THR A:50 A:50 32.0 0.229 -105.5 -12.9