Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 33147541 | . | C | A | CCDS13237.1:NM_181509.2:c.217Cgc>Agc_NP_852610.1:p.73R>S | Homo sapiens microtubule associated protein 1 light chain 3 alpha (MAP1LC3A), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5cx3 | 1 | Q9H492 | 100.0 | 2e-87 |
X-RAY |
2016-08-03 | ARG | A:69 | A:69 | 180.0 | 0.8 | H | -73.6 | -40.2 | 115.0 | 0.511 | 0.289 |
E:Q9BQS8:0.289 |
HOH |
3.552 |
CA |
O |
|
ARG | B:69 | B:69 | 182.0 | 0.809 | H | -72.8 | -42.4 | NA | NA | NA | |||||||||||||
ARG | C:69 | C:69 | 202.0 | 0.898 | H | -73.5 | -42.4 | 105.0 | 0.467 | 0.431 |
G:Q9BQS8:0.431 |
HOH |
6.632 |
NH1 |
O |
||||||||
ARG | D:69 | D:69 | 171.0 | 0.76 | H | -73.5 | -41.8 | NA | NA | NA | |||||||||||||
3eci | 1 | Q9H492 | 100.0 | 3e-87 |
X-RAY |
2008-10-14 | ARG | A:70 | A:69 | 71.0 | NA | H | -61.8 | -46.5 | 71.0 | NA | NA | ||||||
ARG | B:70 | B:69 | 78.0 | NA | H | -59.8 | -56.5 | NA | NA | NA | |||||||||||||
7r9w | 1 | Q9H492 | 100.0 | 1e-86 |
X-RAY |
2022-01-12 | ARG | A:71 | A:69 | 150.0 | 0.667 | H | -64.3 | -38.3 | 150.0 | 0.667 | 0.0 |
JO4 HOH |
7.604 2.860 |
NH2 O |
O03 O |
||
7r9z | 1 | Q9H492 | 100.0 | 1e-86 |
X-RAY |
2022-01-12 | ARG | A:71 | A:69 | 156.0 | 0.693 | H | -63.6 | -37.4 | 156.0 | 0.693 | 0.0 |
2LZ HOH |
8.151 2.697 |
NH2 O |
N10 O |
||
7ra0 | 1 | Q9H492 | 100.0 | 1e-86 |
X-RAY |
2022-01-12 | ARG | A:71 | A:69 | 157.0 | 0.698 | H | -63.5 | -38.6 | 157.0 | 0.698 | 0.0 |
2JI HOH |
7.922 2.822 |
NH2 O |
C5 O |
||
3wan | 1 | O75143,Q9H492 | 100.0 | 1e-86 |
X-RAY |
2013-12-25 | ARG | A:84 | A:85 | 164.0 | 0.729 | H | -65.7 | -45.6 | 164.0 | 0.729 | 0.0 |
HOH |
2.751 |
O |
O |
||
ARG | B:84 | B:85 | 146.0 | 0.649 | H | -69.7 | -42.4 | 146.0 | 0.649 | 0.0 |
HOH |
2.241 |
NH1 |
O |
|||||||||
5dpr | 1 | Q9Y4G2,Q9H492 | 100.0 | 2e-86 |
X-RAY |
2016-09-28 | ARG | A:84 | A:80 | 166.0 | 0.738 | H | -65.0 | -32.0 | 166.0 | 0.738 | 0.0 |
HOH |
5.608 |
HA |
O |
||
ARG | B:84 | B:80 | 173.0 | 0.769 | H | -63.8 | -31.3 | NA | NA | NA | |||||||||||||
ARG | C:84 | C:80 | 159.0 | 0.707 | H | -62.6 | -35.0 | NA | NA | NA | |||||||||||||
ARG | D:84 | D:80 | 175.0 | 0.778 | H | -63.2 | -31.7 | NA | NA | NA | |||||||||||||
3wal | 1 | Q9H492 | 100.0 | 3e-86 |
X-RAY |
2013-12-25 | ARG | A:73 | A:73 | 155.0 | 0.689 | H | -58.4 | -40.7 | 155.0 | 0.689 | 0.0 |
HOH |
2.893 |
NH1 |
O |
||
4zdv | 1 | Q9H492 | 100.0 | 3e-85 |
X-RAY |
2015-06-03 | ARG | A:81 | A:69 | 152.0 | 0.676 | H | -67.0 | -36.6 | 152.0 | 0.676 | 0.0 |
HOH |
2.709 |
NH2 |
O |
||
6tbe | 1 | Q9H492 | 100.0 | 4e-83 |
X-RAY |
2020-11-18 | ARG | A:69 | A:73 | 161.0 | 0.716 | H | -59.6 | -41.6 | 161.0 | 0.716 | 0.0 |
NOV EDO HOH |
7.518 6.683 2.774 |
NH2 O O |
O3 O2 O |
||
5gmv | 1 | Q9GZQ8 | 82.5 | 3e-72 |
X-RAY |
2017-03-08 | ARG | A:69 | B:69 | 127.0 | 0.564 | H | -77.0 | -41.3 | 127.0 | 0.564 | 0.0 |
HOH |
8.020 |
CB |
O |
||
ARG | C:69 | A:69 | 211.0 | 0.938 | H | -66.5 | -44.3 | NA | NA | NA | |||||||||||||
5wrd | 1 | Q9CQV6 | 82.5 | 4e-72 |
X-RAY |
2017-03-29 | ARG | A:69 | A:69 | 168.0 | 0.747 | H | -82.5 | -37.0 | 168.0 | 0.747 | 0.0 |
HOH |
9.026 |
N |
O |
||
ARG | B:69 | B:69 | 176.0 | 0.782 | H | -62.5 | -45.4 | NA | NA | NA | |||||||||||||
5yiq | 1 | Q9CQV6 | 82.5 | 4e-72 |
X-RAY |
2018-05-23 | ARG | A:69 | A:69 | 76.0 | NA | H | -63.1 | -34.8 | 69.0 | NA | NA |
B:O70511:NA |
ZN |
8.645 |
CB |
ZN |
|
5yis | 1 | Q9CQV6 | 82.5 | 4e-72 |
X-RAY |
2018-05-23 | ARG | A:69 | A:69 | 119.0 | NA | H | -65.1 | -39.7 | 95.0 | NA | NA |
D:Q01484:NA |
HOH |
3.572 |
CD |
O |
|
ARG | B:69 | B:69 | 73.0 | NA | H | -64.6 | -40.7 | NA | NA | NA | |||||||||||||
2k6q | 1 | Q62625 | 82.5 | 5e-72 |
NMR |
2008-09-02 | ARG | A:70 | A:69 | 145.0 | 0.644 | H | -53.5 | -43.3 | 78.0 | 0.347 | 0.297 |
B:O08623:0.298 |
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2n9x | 1 | Q9GZQ8 | 82.5 | 5e-72 |
NMR |
2016-12-14 | ARG | A:69 | A:69 | 175.0 | 0.778 | H | -65.7 | -41.8 | 175.0 | 0.778 | 0.0 | ||||||
2zjd | 1 | Q9GZQ8 | 81.82 | 6e-72 |
X-RAY |
2008-06-03 | ARG | A:74 | A:69 | 175.0 | 0.778 | H | -64.6 | -44.3 | 175.0 | 0.778 | 0.0 |
HOH |
2.771 |
NE |
O |
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ARG | C:74 | C:69 | 190.0 | 0.844 | H | -66.4 | -40.4 | NA | NA | NA | |||||||||||||
5d94 | 1 | Q9GZQ8 | 81.82 | 6e-72 |
X-RAY |
2015-10-21 | ARG | A:74 | A:69 | 156.0 | 0.693 | H | -70.0 | -37.7 | 128.0 | 0.569 | 0.124 |
B:Q9BQS8:0.124 |
HOH |
2.983 |
CB |
O |
|
2z0e | 2 | Q62625 | 82.5 | 6e-72 |
X-RAY |
2007-05-22 | ARG | B:74 | B:69 | 59.0 | NA | H | -64.0 | -48.0 | 59.0 | NA | NA |
HOH |
3.825 |
N |
O |
||
2zzp | 2 | Q62625 | 82.5 | 6e-72 |
X-RAY |
2009-03-03 | ARG | B:74 | B:69 | 62.0 | NA | H | -65.8 | -43.4 | 62.0 | NA | NA |
HOH |
3.484 |
CA |
O |
||
1ugm | 1 | Q62625 | 82.5 | 1e-71 |
X-RAY |
2004-07-06 | ARG | A:74 | A:69 | 154.0 | 0.684 | H | -70.2 | -37.8 | 154.0 | 0.684 | 0.0 |
HOH |
3.047 |
NE |
O |
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2z0d | 2 | Q62625 | 82.5 | 1e-71 |
X-RAY |
2007-05-22 | ARG | B:74 | B:69 | 58.0 | NA | H | -64.5 | -48.0 | 58.0 | NA | NA |
HOH |
3.562 |
N |
O |
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5xad | 1 | Q9GZQ8 | 82.35 | 4e-71 |
X-RAY |
2017-07-12 | ARG | A:68 | A:69 | 183.0 | 0.813 | H | -68.8 | -35.5 | 183.0 | 0.813 | 0.0 |
HOH |
3.349 |
NH1 |
O |
||
ARG | B:68 | B:69 | 196.0 | 0.871 | H | -67.2 | -42.2 | NA | NA | NA | |||||||||||||
6lan | 1 | Q8IVM0,Q9GZQ8 | 81.67 | 4e-71 |
X-RAY |
2020-09-30 | ARG | A:79 | A:69 | 148.0 | 0.658 | H | -61.7 | -51.6 | 148.0 | 0.658 | 0.0 |
HOH |
2.883 |
HA |
O |
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5xae | 1 | Q9GZQ8 | 82.35 | 6e-71 |
X-RAY |
2017-07-12 | ARG | A:91 | A:67 | 208.0 | 0.924 | H | -78.1 | -29.1 | 95.0 | 0.422 | 0.502 |
C:Q9GZQ8:0.502 |
HOH |
2.441 |
NH1 |
O |
|
ARG | B:91 | B:67 | 212.0 | 0.942 | H | -77.8 | -25.6 | 212.0 | 0.942 | 0.0 |
HOH |
5.535 |
N |
O |
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ARG | C:91 | C:67 | 212.0 | 0.942 | H | -78.8 | -26.9 | 212.0 | 0.942 | 0.0 |
HOH |
2.683 |
NH1 |
O |
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ARG | D:91 | D:67 | 217.0 | 0.964 | H | -81.0 | -19.9 | 217.0 | 0.964 | 0.0 |
HOH |
3.322 |
CG |
O |
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5xac | 1 | Q9GZQ8 | 82.35 | 6e-71 |
X-RAY |
2017-07-12 | ARG | A:79 | A:69 | 171.0 | 0.76 | H | -70.3 | -43.5 | 142.0 | 0.631 | 0.129 |
C:Q9GZQ8:0.129 |
HOH |
3.060 |
NE |
O |
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ARG | B:79 | B:69 | 164.0 | 0.729 | H | -67.6 | -38.6 | 164.0 | 0.729 | 0.0 |
HOH |
2.500 |
NH1 |
O |
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ARG | C:79 | C:69 | 171.0 | 0.76 | H | -62.7 | -45.0 | 171.0 | 0.76 | 0.0 |
HOH |
2.505 |
NH2 |
O |
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ARG | D:79 | D:69 | 169.0 | 0.751 | H | -74.0 | -37.0 | 108.0 | 0.48 | 0.271 |
B:Q9GZQ8:0.271 |
HOH |
2.620 |
NH1 |
O |
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5ms2 | 2 | Q9GZQ8 | 82.35 | 1e-70 |
X-RAY |
2017-04-19 | ARG | B:74 | B:69 | 169.0 | 0.751 | H | -85.5 | -43.6 | 169.0 | 0.751 | 0.0 |
HOH |
5.056 |
N |
O |
||
3vtw | 1 | Q96CV9,Q9GZQ8 | 82.2 | 3e-70 |
X-RAY |
2013-06-26 | ARG | A:99 | A:84 | 164.0 | 0.729 | H | -65.4 | -44.1 | 164.0 | 0.729 | 0.0 |
HOH |
2.755 |
NH2 |
O |
||
ARG | B:99 | B:84 | 189.0 | 0.84 | H | -64.0 | -44.7 | NA | NA | NA | |||||||||||||
ARG | C:99 | C:84 | 195.0 | 0.867 | H | -55.6 | -50.6 | NA | NA | NA | |||||||||||||
5v4k | 1 | Q9GZQ8 | 82.2 | 4e-70 |
X-RAY |
2017-05-17 | ARG | A:82 | A:1069 | 160.0 | 0.711 | H | -65.0 | -40.5 | 160.0 | 0.711 | 0.0 |
SO4 HOH |
2.793 2.638 |
NH2 NE |
O1 O |
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ARG | B:82 | B:1069 | 184.0 | 0.818 | H | -64.5 | -46.9 | 184.0 | 0.818 | 0.0 |
HOH |
3.345 |
CG |
O |
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6j04 | 1 | Q9GZQ8 | 82.2 | 4e-70 |
X-RAY |
2019-11-06 | ARG | A:69 | A:69 | 155.0 | 0.689 | H | -74.0 | -39.7 | 155.0 | 0.689 | 0.0 |
HOH |
7.789 |
NH2 |
O |
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ARG | B:69 | B:69 | 127.0 | 0.564 | H | -70.3 | -45.9 | NA | NA | NA | |||||||||||||
ARG | C:69 | C:69 | 133.0 | 0.591 | H | -63.8 | -44.6 | NA | NA | NA | |||||||||||||
ARG | D:69 | D:69 | 145.0 | 0.644 | H | -74.0 | -36.6 | NA | NA | NA | |||||||||||||
3wao | 1 | O75143,Q9GZQ8 | 82.2 | 5e-70 |
X-RAY |
2013-12-25 | ARG | A:84 | A:85 | 171.0 | 0.76 | H | -66.6 | -47.3 | 171.0 | 0.76 | 0.0 | ||||||
ARG | B:84 | B:85 | 185.0 | 0.822 | H | -95.6 | -14.3 | NA | NA | NA | |||||||||||||
ARG | C:84 | C:85 | 186.0 | 0.827 | H | -66.2 | -39.7 | NA | NA | NA | |||||||||||||
ARG | D:84 | D:85 | 192.0 | 0.853 | H | -64.7 | -34.8 | NA | NA | NA | |||||||||||||
5dcn | 1 | Q9GZQ8 | 82.2 | 6e-70 |
X-RAY |
2016-03-09 | ARG | A:76 | A:69 | 179.0 | 0.796 | H | -67.7 | -37.0 | 179.0 | 0.796 | 0.0 |
HOH |
4.995 |
NH1 |
O |
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3vtv | 1 | Q96CV9,Q9GZQ8 | 82.2 | 7e-70 |
X-RAY |
2013-06-26 | ARG | A:84 | A:84 | 151.0 | 0.671 | H | -64.9 | -43.4 | 151.0 | 0.671 | 0.0 |
SO4 HOH |
2.899 2.828 |
NE O |
O2 O |
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3x0w | 1 | Q9GZQ8 | 82.2 | 9e-70 |
X-RAY |
2015-01-14 | ARG | A:84 | A:96 | 125.0 | 0.556 | H | -62.3 | -46.6 | 125.0 | 0.556 | 0.0 |
HOH |
4.370 |
O |
O |
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ARG | B:84 | B:96 | 159.0 | 0.707 | H | -60.8 | -47.9 | NA | NA | NA | |||||||||||||
4waa | 1 | Q9GZQ8 | 82.2 | 9e-70 |
X-RAY |
2015-09-09 | ARG | A:84 | A:85 | 141.0 | 0.627 | H | -83.5 | -44.9 | 141.0 | 0.627 | 0.0 |
HOH |
3.591 |
NE |
O |
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ARG | B:84 | B:85 | 158.0 | 0.702 | H | -75.1 | -43.5 | 158.0 | 0.702 | 0.0 |
HOH |
3.475 |
NH2 |
O |
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3vtu | 1 | Q9GZQ8 | 82.2 | 9e-70 |
X-RAY |
2013-06-26 | ARG | A:73 | A:73 | 147.0 | 0.653 | H | -67.5 | -44.1 | 147.0 | 0.653 | 0.0 |
SO4 HOH |
6.563 2.805 |
O O |
O1 O |
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7elg | 1 | Q9GZQ8 | 82.2 | 9e-70 |
X-RAY |
2021-10-13 | ARG | A:73 | A:73 | 146.0 | 0.649 | H | -68.2 | -44.1 | 146.0 | 0.649 | 0.0 |
HOH |
2.783 |
O |
O |
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5ms5 | 1 | Q5ZUV9,Q9GZQ8 | 82.2 | 9e-70 |
X-RAY |
2017-04-19 | ARG | A:87 | A:69 | 153.0 | 0.68 | H | -63.7 | -44.4 | 153.0 | 0.68 | 0.0 |
HOH |
3.563 |
N |
O |
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ARG | B:87 | B:69 | 131.0 | 0.582 | H | -64.9 | -43.5 | NA | NA | NA | |||||||||||||
5ms6 | 1 | Q9GZQ8 | 82.2 | 9e-70 |
X-RAY |
2017-04-19 | ARG | A:87 | A:69 | 137.0 | 0.609 | H | -63.8 | -49.1 | 137.0 | 0.609 | 0.0 |
HOH |
4.156 |
CA |
O |
||
ARG | B:87 | B:69 | 126.0 | 0.56 | H | -65.1 | -47.9 | NA | NA | NA | |||||||||||||
2lue | 1 | Q9GZQ8 | 82.61 | 2e-68 |
NMR |
2013-07-17 | ARG | A:69 | A:69 | 184.0 | 0.818 | H | -59.5 | -59.6 | 158.0 | 0.702 | 0.116 |
B:Q96CV9:0.116 |
|||||
5w9a | 2 | Q9GZQ8 | 81.58 | 1e-66 |
X-RAY |
2018-10-10 | ARG | B:66 | C:69 | 149.0 | 0.662 | H | -76.6 | -36.5 | 97.0 | 0.431 | 0.231 |
D:Q0PF16:0.004 A:Q0PF16:0.231 |
|||||
ARG | C:66 | D:69 | 134.0 | 0.596 | H | -76.1 | -38.1 | 75.0 | 0.333 | 0.263 |
D:Q0PF16:0.258 A:Q0PF16:0.004 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9h492-f1 | 1 | Q9H492 | 100.0 | 8e-88 | ARG | A:69 | A:69 | 207.0 | 0.92 | H | -64.0 | -41.6 | |
af-q9gzq8-f1 | 1 | Q9GZQ8 | 82.5 | 1e-72 | ARG | A:69 | A:69 | 195.0 | 0.867 | H | -64.6 | -41.2 | |
af-a6nce7-f1 | 1 | A6NCE7 | 80.99 | 5e-71 | ARG | A:69 | A:69 | 210.0 | 0.933 | H | -64.2 | -41.3 |