Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 33147655 . G A CCDS13237.1:NM_181509.2:c.331Ggc>Agc_NP_852610.1:p.111G>S Homo sapiens microtubule associated protein 1 light chain 3 alpha (MAP1LC3A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5cx3 1 Q9H492 100.0 2e-87 X-RAY
 2016-08-03 GLY A:107 A:107 12.0 0.16 S 99.2 -13.8 12.0 0.16 0.0 GOL
HOH
 3.317
4.457
 CA
N
 C3
O
GLY B:107 B:107 13.0 0.173 S 97.1 -14.4 NA NA NA
GLY C:107 C:107 12.0 0.16 S 100.2 -11.9 12.0 0.16 0.0 HOH
 6.915
 C
 O
GLY D:107 D:107 13.0 0.173 S 99.1 -15.5 NA NA NA
3eci 1 Q9H492 100.0 3e-87 X-RAY
 2008-10-14 GLY A:108 A:107 13.0 0.173 S 95.9 -22.8 13.0 0.173 0.0
GLY B:108 B:107 13.0 0.173 S 90.9 -12.8 NA NA NA
7r9w 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 GLY A:109 A:107 9.0 0.12 S 96.8 -11.9 9.0 0.12 0.0 HOH
 3.893
 CA
 O
7r9z 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 GLY A:109 A:107 5.0 0.067 S 94.9 -12.6 5.0 0.067 0.0 HOH
 3.943
 N
 O
7ra0 1 Q9H492 100.0 1e-86 X-RAY
 2022-01-12 GLY A:109 A:107 4.0 0.053 S 95.5 -11.7 4.0 0.053 0.0 HOH
 3.692
 CA
 O
3wan 1 O75143,Q9H492 100.0 1e-86 X-RAY
 2013-12-25 GLY A:122 A:123 8.0 0.107 S 93.1 -10.7 8.0 0.107 0.0 HOH
 3.727
 CA
 O
GLY B:122 B:123 12.0 0.16 S 94.4 -8.4 12.0 0.16 0.0 HOH
 3.560
 CA
 O
5dpr 1 Q9Y4G2,Q9H492 100.0 2e-86 X-RAY
 2016-09-28 GLY A:122 A:118 12.0 0.16 S 98.6 -13.4 12.0 0.16 0.0 HOH
 7.049
 H
 O
GLY B:122 B:118 11.0 0.147 S 99.6 -12.5 NA NA NA
GLY C:122 C:118 10.0 0.133 S 98.3 -12.1 NA NA NA
GLY D:122 D:118 12.0 0.16 S 100.1 -12.7 NA NA NA
3wal 1 Q9H492 100.0 3e-86 X-RAY
 2013-12-25 GLY A:111 A:111 10.0 0.133 S 91.3 -11.3 10.0 0.133 0.0 MLT
HOH
 6.899
3.559
 N
CA
 O4
O
4zdv 1 Q9H492 100.0 3e-85 X-RAY
 2015-06-03 GLY A:119 A:107 10.0 0.133 S 96.8 -5.5 10.0 0.133 0.0 HOH
 3.446
 N
 O
6tbe 1 Q9H492 100.0 4e-83 X-RAY
 2020-11-18 GLY A:107 A:111 8.0 0.107 S 97.1 -12.6 8.0 0.107 0.0 HOH
 3.854
 CA
 O
5gmv 1 Q9GZQ8 82.5 3e-72 X-RAY
 2017-03-08 GLY A:107 B:107 12.0 0.16 S 97.1 -10.8 12.0 0.16 0.0 HOH
 3.784
 N
 O
GLY C:107 A:107 6.0 0.08 S 94.0 -15.6 NA NA NA
5wrd 1 Q9CQV6 82.5 4e-72 X-RAY
 2017-03-29 GLY A:107 A:107 10.0 0.133 S 103.1 -9.8 10.0 0.133 0.0 HOH
 7.121
 C
 O
GLY B:107 B:107 11.0 0.147 S 93.4 -8.4 NA NA NA
5yiq 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 GLY A:107 A:107 12.0 0.16 S 102.1 -11.8 12.0 0.16 0.0 HOH
 7.101
 C
 O
5yis 1 Q9CQV6 82.5 4e-72 X-RAY
 2018-05-23 GLY A:107 A:107 11.0 0.147 S 93.2 -6.0 11.0 0.147 0.0 HOH
 3.738
 CA
 O
GLY B:107 B:107 4.0 0.053 S 92.2 -10.9 NA NA NA
2k6q 1 Q62625 82.5 5e-72 NMR
 2008-09-02 GLY A:108 A:107 4.0 0.053 95.4 27.5 4.0 0.053 0.0
2n9x 1 Q9GZQ8 82.5 5e-72 NMR
 2016-12-14 GLY A:107 A:107 15.0 0.2 S 96.2 -5.2 15.0 0.2 0.0
2zjd 1 Q9GZQ8 81.82 6e-72 X-RAY
 2008-06-03 GLY A:112 A:107 12.0 0.16 S 96.0 -10.7 12.0 0.16 0.0 HOH
 3.610
 N
 O
GLY C:112 C:107 13.0 0.173 S 98.2 -10.4 NA NA NA
5d94 1 Q9GZQ8 81.82 6e-72 X-RAY
 2015-10-21 GLY A:112 A:107 11.0 0.147 S 99.3 -14.7 11.0 0.147 0.0 HOH
 3.573
 CA
 O
2z0e 2 Q62625 82.5 6e-72 X-RAY
 2007-05-22 GLY B:112 B:107 7.0 0.093 S 101.7 -18.3 7.0 0.093 0.0 HOH
 3.735
 N
 O
2zzp 2 Q62625 82.5 6e-72 X-RAY
 2009-03-03 GLY B:112 B:107 10.0 0.133 S 103.5 -21.7 10.0 0.133 0.0 HOH
 3.550
 CA
 O
1ugm 1 Q62625 82.5 1e-71 X-RAY
 2004-07-06 GLY A:112 A:107 5.0 0.067 S 105.6 -19.1 5.0 0.067 0.0 HOH
 3.863
 CA
 O
2z0d 2 Q62625 82.5 1e-71 X-RAY
 2007-05-22 GLY B:112 B:107 11.0 0.147 S 107.2 -18.3 11.0 0.147 0.0 HOH
 3.552
 CA
 O
5xad 1 Q9GZQ8 82.35 4e-71 X-RAY
 2017-07-12 GLY A:106 A:107 5.0 0.067 S 99.5 -11.0 5.0 0.067 0.0 HOH
 3.804
 CA
 O
GLY B:106 B:107 9.0 0.12 S 100.5 -11.3 NA NA NA
6lan 1 Q8IVM0,Q9GZQ8 81.67 4e-71 X-RAY
 2020-09-30 GLY A:117 A:107 12.0 0.16 S 101.6 -12.6 12.0 0.16 0.0 HOH
 2.849
 HA3
 O
5xae 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 GLY A:129 A:105 12.0 0.16 S 93.6 -9.1 12.0 0.16 0.0 HOH
 4.157
 N
 O
GLY B:129 B:105 12.0 0.16 S 96.0 -9.9 12.0 0.16 0.0 HOH
 4.561
 O
 O
GLY C:129 C:105 11.0 0.147 S 96.1 -9.3 11.0 0.147 0.0 HOH
 6.978
 O
 O
GLY D:129 D:105 10.0 0.133 S 94.4 -8.8 10.0 0.133 0.0 HOH
 4.453
 CA
 O
5xac 1 Q9GZQ8 82.35 6e-71 X-RAY
 2017-07-12 GLY A:117 A:107 10.0 0.133 S 94.5 -8.0 10.0 0.133 0.0 HOH
 3.600
 CA
 O
GLY B:117 B:107 11.0 0.147 S 99.9 -10.2 11.0 0.147 0.0 HOH
 3.489
 CA
 O
GLY C:117 C:107 11.0 0.147 S 98.8 -10.8 11.0 0.147 0.0 HOH
 3.716
 CA
 O
GLY D:117 D:107 10.0 0.133 S 99.0 -6.5 10.0 0.133 0.0 HOH
 3.670
 CA
 O
5ms2 2 Q9GZQ8 82.35 1e-70 X-RAY
 2017-04-19 GLY B:112 B:107 10.0 0.133 S 101.3 -14.2 10.0 0.133 0.0
3vtw 1 Q96CV9,Q9GZQ8 82.2 3e-70 X-RAY
 2013-06-26 GLY A:137 A:122 10.0 0.133 S 79.5 1.9 10.0 0.133 0.0 SO4
HOH
 7.832
5.670
 N
N
 O4
O
GLY B:137 B:122 8.0 0.107 S 106.9 -8.9 NA NA NA
GLY C:137 C:122 11.0 0.147 S 87.1 -0.4 NA NA NA
5v4k 1 Q9GZQ8 82.2 4e-70 X-RAY
 2017-05-17 GLY A:120 A:1107 6.0 0.08 S 99.6 -9.7 6.0 0.08 0.0 HOH
 3.575
 N
 O
GLY B:120 B:1107 5.0 0.067 S 95.7 -9.6 5.0 0.067 0.0 HOH
 3.609
 CA
 O
6j04 1 Q9GZQ8 82.2 4e-70 X-RAY
 2019-11-06 GLY A:107 A:107 11.0 0.147 S 104.3 -16.2 11.0 0.147 0.0 HOH
 3.752
 CA
 O
GLY B:107 B:107 6.0 0.08 S 100.6 -15.4 NA NA NA
GLY C:107 C:107 3.0 0.04 S 94.9 -8.0 NA NA NA
GLY D:107 D:107 5.0 0.067 S 105.1 -14.1 NA NA NA
3wao 1 O75143,Q9GZQ8 82.2 5e-70 X-RAY
 2013-12-25 GLY A:122 A:123 5.0 0.067 S 108.7 -45.5 5.0 0.067 0.0
GLY B:122 B:123 9.0 0.12 S 105.3 -25.9 NA NA NA
GLY C:122 C:123 13.0 0.173 S 91.8 -7.2 NA NA NA
GLY D:122 D:123 6.0 0.08 S 85.2 7.3 NA NA NA
5dcn 1 Q9GZQ8 82.2 6e-70 X-RAY
 2016-03-09 GLY A:114 A:107 11.0 0.147 S 104.7 -13.5 11.0 0.147 0.0 HOH
 3.534
 CA
 O
3vtv 1 Q96CV9,Q9GZQ8 82.2 7e-70 X-RAY
 2013-06-26 GLY A:122 A:122 11.0 0.147 S 95.5 -12.2 11.0 0.147 0.0 HOH
 3.545
 CA
 O
3x0w 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-01-14 GLY A:122 A:134 13.0 0.173 S 85.5 -10.6 13.0 0.173 0.0 HOH
 7.501
 C
 O
GLY B:122 B:134 7.0 0.093 S 91.8 -14.8 NA NA NA
4waa 1 Q9GZQ8 82.2 9e-70 X-RAY
 2015-09-09 GLY A:122 A:123 6.0 0.08 S 92.1 -9.7 6.0 0.08 0.0 HOH
 5.998
 O
 O
GLY B:122 B:123 3.0 0.04 S 93.3 -13.1 3.0 0.04 0.0 HOH
 3.741
 N
 O
3vtu 1 Q9GZQ8 82.2 9e-70 X-RAY
 2013-06-26 GLY A:111 A:111 11.0 0.147 S 98.0 -12.2 11.0 0.147 0.0 SO4
HOH
 7.841
3.858
 N
CA
 O3
O
7elg 1 Q9GZQ8 82.2 9e-70 X-RAY
 2021-10-13 GLY A:111 A:111 11.0 0.147 S 99.7 -12.2 11.0 0.147 0.0 SO4
HOH
 8.093
3.650
 N
CA
 O4
O
5ms5 1 Q5ZUV9,Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 GLY A:125 A:107 5.0 0.067 S 98.6 -10.5 5.0 0.067 0.0 HOH
 3.647
 CA
 O
GLY B:125 B:107 4.0 0.053 S 98.3 -9.6 NA NA NA
5ms6 1 Q9GZQ8 82.2 9e-70 X-RAY
 2017-04-19 GLY A:125 A:107 5.0 0.067 S 96.4 -12.7 5.0 0.067 0.0 HOH
 3.334
 CA
 O
GLY B:125 B:107 6.0 0.08 S 97.2 -11.2 NA NA NA
2lue 1 Q9GZQ8 82.61 2e-68 NMR
 2013-07-17 GLY A:107 A:107 24.0 0.32 S 91.4 1.2 24.0 0.32 0.0
5w9a 2 Q9GZQ8 81.58 1e-66 X-RAY
 2018-10-10 GLY B:104 C:107 9.0 0.12 S 123.7 -14.4 9.0 0.12 0.0
GLY C:104 D:107 10.0 0.133 S 123.1 -15.8 10.0 0.133 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h492-f1 1 Q9H492 100.0 8e-88 GLY A:107 A:107 13.0 0.173 S 86.2 6.8
af-q9gzq8-f1 1 Q9GZQ8 82.5 1e-72 GLY A:107 A:107 14.0 0.187 S 87.3 3.7
af-a6nce7-f1 1 A6NCE7 80.99 5e-71 GLY A:107 A:107 13.0 0.173 S 87.0 4.6