Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 36760874 | . | A | C | CCDS13302.1:NM_004613.2:c.1644taT>taG_NP_004604.2:p.548Y>* | Homo sapiens transglutaminase 2 (TGM2), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4pyg | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2015-02-11 | TYR | A:548 | A:548 | 2.0 | 0.009 | H | -44.4 | -47.3 | 2.0 | 0.009 | 0.0 |
HOH |
4.043 |
CD2 |
O |
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| TYR | B:548 | B:548 | 6.0 | 0.026 | H | -44.7 | -55.7 | NA | NA | NA | |||||||||||||
| TYR | C:548 | E:548 | 4.0 | 0.017 | H | -48.6 | -54.5 | NA | NA | NA | |||||||||||||
| 6a8p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2018-09-26 | TYR | A:548 | A:548 | 5.0 | 0.022 | H | -59.1 | -39.0 | 5.0 | 0.022 | 0.0 | ||||||
| TYR | B:548 | B:548 | 8.0 | 0.035 | H | -60.1 | -38.9 | NA | NA | NA | |||||||||||||
| TYR | C:548 | C:548 | 6.0 | 0.026 | H | -60.8 | -40.1 | NA | NA | NA | |||||||||||||
| 6kzb | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2020-12-09 | TYR | A:548 | A:548 | 9.0 | 0.039 | H | -61.3 | -46.0 | 9.0 | 0.039 | 0.0 | ||||||
| TYR | B:548 | B:548 | 8.0 | 0.035 | H | -60.4 | -45.5 | NA | NA | NA | |||||||||||||
| TYR | C:548 | C:548 | 6.0 | 0.026 | H | -59.6 | -43.1 | NA | NA | NA | |||||||||||||
| 3s3j | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | TYR | A:555 | A:548 | 14.0 | 0.061 | H | -50.3 | -45.6 | 14.0 | 0.061 | 0.0 |
HOH |
2.969 |
N |
O |
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| 3s3p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | TYR | A:555 | A:548 | 25.0 | 0.109 | H | -54.6 | -48.2 | 25.0 | 0.109 | 0.0 | ||||||
| 3s3s | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | TYR | A:555 | A:548 | 27.0 | 0.117 | H | -47.2 | -50.9 | 27.0 | 0.117 | 0.0 |
HOH |
3.358 |
N |
O |
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| 3ly6 | 1 | P21980 | 99.85 | 0.0 |
X-RAY |
2010-08-18 | TYR | A:548 | A:548 | 10.0 | 0.043 | G | -62.4 | -48.7 | 10.0 | 0.043 | 0.0 | ||||||
| TYR | B:548 | B:548 | 10.0 | 0.043 | G | -61.4 | -48.8 | NA | NA | NA | |||||||||||||
| TYR | C:548 | C:548 | 10.0 | 0.043 | G | -61.4 | -48.5 | NA | NA | NA | |||||||||||||
| 1kv3 | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2002-03-13 | TYR | A:548 | A:548 | 10.0 | 0.043 | H | -54.7 | -47.1 | 10.0 | 0.043 | 0.0 |
HOH |
2.867 |
OH |
O |
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| TYR | B:548 | B:548 | 8.0 | 0.035 | H | -55.1 | -45.7 | NA | NA | NA | |||||||||||||
| TYR | C:548 | C:548 | 8.0 | 0.035 | H | -51.2 | -48.2 | 8.0 | 0.035 | 0.0 |
HOH |
2.618 |
OH |
O |
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| TYR | D:548 | D:548 | 10.0 | 0.043 | H | -54.7 | -48.7 | NA | NA | NA | |||||||||||||
| TYR | E:548 | E:548 | 9.0 | 0.039 | H | -54.1 | -46.4 | NA | NA | NA | |||||||||||||
| TYR | F:548 | F:548 | 9.0 | 0.039 | H | -52.4 | -46.5 | NA | NA | NA | |||||||||||||
| 2q3z | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2007-10-23 | TYR | A:548 | A:548 | 10.0 | 0.043 | H | -60.2 | -47.0 | 10.0 | 0.043 | 0.0 |
HOH |
6.135 |
N |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p21980-f1 | 1 | P21980 | 100.0 | 0.0 | TYR | A:548 | A:548 | 25.0 | 0.109 | H | -52.1 | -44.3 | |