Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 36760894 | . | C | A | CCDS13302.1:NM_004613.2:c.1624Gtt>Ttt_NP_004604.2:p.542V>F | Homo sapiens transglutaminase 2 (TGM2), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4pyg | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2015-02-11 | VAL | A:542 | A:542 | 4.0 | 0.026 | E | -111.4 | 122.0 | 4.0 | 0.026 | 0.0 |
HOH |
7.177 |
C |
O |
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| VAL | B:542 | B:542 | 4.0 | 0.026 | E | -107.9 | 115.3 | NA | NA | NA | |||||||||||||
| VAL | C:542 | E:542 | 9.0 | 0.058 | E | -111.0 | 114.5 | NA | NA | NA | |||||||||||||
| 6a8p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2018-09-26 | VAL | A:542 | A:542 | 5.0 | 0.032 | E | -112.3 | 117.6 | 5.0 | 0.032 | 0.0 | ||||||
| VAL | B:542 | B:542 | 5.0 | 0.032 | E | -112.9 | 117.3 | NA | NA | NA | |||||||||||||
| VAL | C:542 | C:542 | 9.0 | 0.058 | E | -109.6 | 120.2 | NA | NA | NA | |||||||||||||
| 6kzb | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2020-12-09 | VAL | A:542 | A:542 | 7.0 | 0.045 | E | -100.3 | 124.9 | 7.0 | 0.045 | 0.0 |
CA |
6.455 |
N |
CA |
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| VAL | B:542 | B:542 | 11.0 | 0.071 | E | -101.9 | 124.2 | NA | NA | NA | |||||||||||||
| VAL | C:542 | C:542 | 4.0 | 0.026 | E | -104.0 | 123.7 | NA | NA | NA | |||||||||||||
| 3s3j | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | VAL | A:549 | A:542 | 10.0 | 0.065 | E | -91.3 | 117.7 | 10.0 | 0.065 | 0.0 |
HOH |
9.260 |
CG1 |
O |
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| 3s3p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | VAL | A:549 | A:542 | 11.0 | 0.071 | E | -97.4 | 118.7 | 11.0 | 0.071 | 0.0 |
HOH |
8.671 |
CG2 |
O |
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| 3s3s | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | VAL | A:549 | A:542 | 12.0 | 0.077 | E | -89.8 | 121.7 | 12.0 | 0.077 | 0.0 |
HOH |
7.537 |
CG2 |
O |
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| 3ly6 | 1 | P21980 | 99.85 | 0.0 |
X-RAY |
2010-08-18 | VAL | A:542 | A:542 | 5.0 | 0.032 | E | -106.6 | 122.1 | 5.0 | 0.032 | 0.0 | ||||||
| VAL | B:542 | B:542 | 5.0 | 0.032 | E | -106.2 | 121.5 | NA | NA | NA | |||||||||||||
| VAL | C:542 | C:542 | 4.0 | 0.026 | E | -106.6 | 120.6 | NA | NA | NA | |||||||||||||
| 1kv3 | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2002-03-13 | VAL | A:542 | A:542 | 7.0 | 0.045 | E | -110.1 | 118.3 | 7.0 | 0.045 | 0.0 |
HOH |
3.843 |
CG1 |
O |
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| VAL | B:542 | B:542 | 8.0 | 0.052 | E | -106.0 | 118.0 | NA | NA | NA | |||||||||||||
| VAL | C:542 | C:542 | 8.0 | 0.052 | E | -106.2 | 120.1 | 8.0 | 0.052 | 0.0 |
HOH |
5.747 |
N |
O |
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| VAL | D:542 | D:542 | 7.0 | 0.045 | E | -109.1 | 122.0 | NA | NA | NA | |||||||||||||
| VAL | E:542 | E:542 | 7.0 | 0.045 | E | -106.0 | 119.0 | NA | NA | NA | |||||||||||||
| VAL | F:542 | F:542 | 7.0 | 0.045 | E | -108.0 | 123.0 | NA | NA | NA | |||||||||||||
| 2q3z | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2007-10-23 | VAL | A:542 | A:542 | 12.0 | 0.077 | E | -88.1 | 113.8 | 12.0 | 0.077 | 0.0 |
HOH |
8.489 |
CG2 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p21980-f1 | 1 | P21980 | 100.0 | 0.0 | VAL | A:542 | A:542 | 6.0 | 0.039 | E | -114.7 | 114.7 | |