Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 36776379 . C A CCDS13302.1:NM_004613.2:c.665cGg>cTg_NP_004604.2:p.222R>L Homo sapiens transglutaminase 2 (TGM2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4pyg 1 P21980 100.0 0.0 X-RAY
 2015-02-11 ARG A:222 A:222 62.0 0.276 H -71.1 -38.0 62.0 0.276 0.0 HOH
 8.484
 NH1
 O
ARG B:222 B:222 47.0 0.209 H -44.6 -47.2 NA NA NA
ARG C:222 E:222 46.0 0.204 H -54.8 -43.6 NA NA NA
6a8p 1 P21980 100.0 0.0 X-RAY
 2018-09-26 ARG A:222 A:222 74.0 0.329 H -61.6 -45.1 74.0 0.329 0.0
ARG B:222 B:222 97.0 0.431 H -60.6 -45.3 NA NA NA
ARG C:222 C:222 92.0 0.409 H -61.3 -44.8 NA NA NA
6kzb 1 P21980 100.0 0.0 X-RAY
 2020-12-09 ARG A:222 A:222 62.0 0.276 H -57.3 -47.9 62.0 0.276 0.0
ARG B:222 B:222 68.0 0.302 H -57.7 -47.9 NA NA NA
ARG C:222 C:222 89.0 0.396 H -58.7 -46.8 NA NA NA
3s3j 1 P21980 100.0 0.0 X-RAY
 2012-06-06 ARG A:229 A:222 25.0 0.111 H -55.4 -44.1 25.0 0.111 0.0 SO4
SO4
HOH
 2.791
7.125
3.519
 NH2
CD
CB
 O4
O2
O
3s3p 1 P21980 100.0 0.0 X-RAY
 2012-06-06 ARG A:229 A:222 46.0 0.204 H -54.3 -50.5 46.0 0.204 0.0 SO4
SO4
HOH
 2.746
6.584
3.326
 NH2
NE
CG
 O1
O2
O
3s3s 1 P21980 100.0 0.0 X-RAY
 2012-06-06 ARG A:229 A:222 47.0 0.209 H -55.3 -54.9 47.0 0.209 0.0 SO4
SO4
HOH
 2.891
6.743
3.313
 NH2
NE
NH2
 O1
O3
O
3ly6 1 P21980 99.85 0.0 X-RAY
 2010-08-18 ARG A:222 A:222 75.0 0.333 H -62.9 -43.1 75.0 0.333 0.0
ARG B:222 B:222 77.0 0.342 H -63.7 -42.9 NA NA NA
ARG C:222 C:222 78.0 0.347 H -63.6 -42.6 NA NA NA
1kv3 1 P21980 99.27 0.0 X-RAY
 2002-03-13 ARG A:222 A:222 82.0 0.364 H -59.1 -32.9 82.0 0.364 0.0 HOH
 5.412
 NH1
 O
ARG B:222 B:222 52.0 0.231 H -56.4 -34.9 NA NA NA
ARG C:222 C:222 53.0 0.236 H -59.4 -30.7 53.0 0.236 0.0 HOH
 3.623
 CB
 O
ARG D:222 D:222 42.0 0.187 H -59.3 -34.8 NA NA NA
ARG E:222 E:222 58.0 0.258 H -63.1 -34.6 NA NA NA
ARG F:222 F:222 84.0 0.373 H -59.6 -34.0 NA NA NA
2q3z 1 P21980 99.27 0.0 X-RAY
 2007-10-23 ARG A:222 A:222 15.0 0.067 H -56.2 -47.3 15.0 0.067 0.0 SO4
SO4
HOH
 2.764
6.968
2.788
 NH2
NE
O
 O2
O4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21980-f1 1 P21980 100.0 0.0 ARG A:222 A:222 11.0 0.049 H -67.7 -31.2