Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 36776418 . C A CCDS13302.1:NM_004613.2:c.626cGt>cTt_NP_004604.2:p.209R>L Homo sapiens transglutaminase 2 (TGM2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4pyg 1 P21980 100.0 0.0 X-RAY
 2015-02-11 ARG A:209 A:209 134.0 0.596 H -74.0 -55.9 134.0 0.596 0.0
ARG B:209 B:209 132.0 0.587 G -99.3 -3.8 NA NA NA
ARG C:209 E:209 143.0 0.636 H -85.4 4.6 NA NA NA
6a8p 1 P21980 100.0 0.0 X-RAY
 2018-09-26 ARG A:209 A:209 139.0 0.618 H -63.3 -43.0 139.0 0.618 0.0
ARG B:209 B:209 137.0 0.609 H -65.5 -41.1 NA NA NA
ARG C:209 C:209 115.0 0.511 H -64.9 -41.3 NA NA NA
6kzb 1 P21980 100.0 0.0 X-RAY
 2020-12-09 ARG A:209 A:209 128.0 0.569 H -59.7 -43.1 128.0 0.569 0.0
ARG B:209 B:209 44.0 NA H -61.6 -39.9 NA NA NA
ARG C:209 C:209 159.0 0.707 H -60.8 -40.9 NA NA NA
3s3j 1 P21980 100.0 0.0 X-RAY
 2012-06-06 ARG A:216 A:209 155.0 0.689 H -70.2 -41.4 155.0 0.689 0.0 SO4
SO4
HOH
 8.675
2.734
3.725
 NH2
NE
NE
 O3
O1
O
3s3p 1 P21980 100.0 0.0 X-RAY
 2012-06-06 ARG A:216 A:209 155.0 0.689 H -59.8 -40.3 155.0 0.689 0.0 SO4
SO4
HOH
 8.025
2.692
3.856
 NH2
NE
NH1
 O4
O4
O
3s3s 1 P21980 100.0 0.0 X-RAY
 2012-06-06 ARG A:216 A:209 156.0 0.693 H -73.0 -39.6 156.0 0.693 0.0 SO4
SO4
HOH
 8.395
2.761
3.447
 NH2
NE
N
 O4
O4
O
3ly6 1 P21980 99.85 0.0 X-RAY
 2010-08-18 ARG A:209 A:209 153.0 0.68 H -50.5 -56.2 153.0 0.68 0.0
ARG B:209 B:209 153.0 0.68 H -50.9 -56.5 NA NA NA
ARG C:209 C:209 151.0 0.671 H -51.6 -56.1 NA NA NA
1kv3 1 P21980 99.27 0.0 X-RAY
 2002-03-13 ARG A:209 A:209 137.0 0.609 H -71.2 -41.7 137.0 0.609 0.0 HOH
 5.434
 N
 O
ARG B:209 B:209 126.0 0.56 H -63.1 -51.7 NA NA NA
ARG C:209 C:209 145.0 0.644 H -64.2 -49.4 145.0 0.644 0.0 HOH
 2.850
 NH1
 O
ARG D:209 D:209 141.0 0.627 H -78.9 -28.2 NA NA NA
ARG E:209 E:209 131.0 0.582 H -63.9 -53.3 NA NA NA
ARG F:209 F:209 142.0 0.631 H -72.3 -34.7 NA NA NA
2q3z 1 P21980 99.27 0.0 X-RAY
 2007-10-23 ARG A:209 A:209 150.0 0.667 H -67.2 -42.9 150.0 0.667 0.0 SO4
SO4
HOH
 8.618
2.636
3.613
 NH2
NE
CD
 O1
O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21980-f1 1 P21980 100.0 0.0 ARG A:209 A:209 164.0 0.729 H -72.0 -34.3