Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 36789828 | . | C | A | CCDS13302.1:NM_004613.2:c.184Gtg>Ttg_NP_004604.2:p.62V>L | Homo sapiens transglutaminase 2 (TGM2), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4pyg | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2015-02-11 | VAL | A:62 | A:62 | 15.0 | 0.097 | E | -143.0 | 130.9 | 15.0 | 0.097 | 0.0 |
HOH |
3.980 |
O |
O |
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| VAL | B:62 | B:62 | 17.0 | 0.11 | E | -128.0 | 139.3 | NA | NA | NA | |||||||||||||
| VAL | C:62 | E:62 | 19.0 | 0.123 | E | -137.5 | 149.7 | NA | NA | NA | |||||||||||||
| 6a8p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2018-09-26 | VAL | A:62 | A:62 | 16.0 | 0.103 | E | -138.8 | 142.3 | 16.0 | 0.103 | 0.0 | ||||||
| VAL | B:62 | B:62 | 6.0 | 0.039 | E | -144.2 | 139.7 | NA | NA | NA | |||||||||||||
| VAL | C:62 | C:62 | 23.0 | 0.148 | E | -142.8 | 138.7 | NA | NA | NA | |||||||||||||
| 6kzb | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2020-12-09 | VAL | A:62 | A:62 | 7.0 | 0.045 | E | -129.6 | 138.7 | 7.0 | 0.045 | 0.0 | ||||||
| VAL | B:62 | B:62 | 25.0 | 0.161 | E | -128.0 | 133.5 | NA | NA | NA | |||||||||||||
| VAL | C:62 | C:62 | 9.0 | 0.058 | E | -129.5 | 145.0 | NA | NA | NA | |||||||||||||
| 3s3j | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | VAL | A:69 | A:62 | 21.0 | 0.135 | E | -138.1 | 142.1 | 21.0 | 0.135 | 0.0 |
SO4 HOH |
7.005 3.957 |
CG1 CG2 |
O4 O |
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| 3s3p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | VAL | A:69 | A:62 | 24.0 | 0.155 | E | -125.8 | 145.8 | 24.0 | 0.155 | 0.0 |
SO4 HOH |
7.028 3.600 |
CG1 CG2 |
O2 O |
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| 3s3s | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | VAL | A:69 | A:62 | 22.0 | 0.142 | E | -135.3 | 146.2 | 22.0 | 0.142 | 0.0 |
SO4 HOH |
7.250 3.648 |
CG1 CG1 |
O1 O |
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| 3ly6 | 1 | P21980 | 99.85 | 0.0 |
X-RAY |
2010-08-18 | VAL | A:62 | A:62 | 12.0 | 0.077 | E | -122.9 | 156.4 | 12.0 | 0.077 | 0.0 | ||||||
| VAL | B:62 | B:62 | 13.0 | 0.084 | E | -124.0 | 154.9 | NA | NA | NA | |||||||||||||
| VAL | C:62 | C:62 | 11.0 | 0.071 | E | -123.4 | 154.9 | NA | NA | NA | |||||||||||||
| 1kv3 | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2002-03-13 | VAL | A:62 | A:62 | 37.0 | 0.239 | E | -138.8 | 132.8 | 37.0 | 0.239 | 0.0 |
HOH |
7.708 |
C |
O |
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| VAL | B:62 | B:62 | 35.0 | 0.226 | E | -138.9 | 133.4 | NA | NA | NA | |||||||||||||
| VAL | C:62 | C:62 | 36.0 | 0.232 | E | -138.8 | 135.2 | 36.0 | 0.232 | 0.0 |
HOH |
5.172 |
CG1 |
O |
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| VAL | D:62 | D:62 | 35.0 | 0.226 | E | -139.1 | 133.3 | NA | NA | NA | |||||||||||||
| VAL | E:62 | E:62 | 36.0 | 0.232 | E | -137.9 | 134.2 | NA | NA | NA | |||||||||||||
| VAL | F:62 | F:62 | 36.0 | 0.232 | E | -138.4 | 133.2 | NA | NA | NA | |||||||||||||
| 2q3z | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2007-10-23 | VAL | A:62 | A:62 | 19.0 | 0.123 | E | -132.9 | 148.1 | 19.0 | 0.123 | 0.0 |
HOH |
3.721 |
CG1 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p21980-f1 | 1 | P21980 | 100.0 | 0.0 | VAL | A:62 | A:62 | 33.0 | 0.213 | E | -139.5 | 143.2 | |