Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr20 | 36789965 | . | G | A | CCDS13302.1:NM_004613.2:c.47aCc>aTc_NP_004604.2:p.16T>I | Homo sapiens transglutaminase 2 (TGM2), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4pyg | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2015-02-11 | THR | A:16 | A:16 | 36.0 | 0.257 | H | -22.8 | -53.2 | 36.0 | 0.257 | 0.0 |
HOH |
6.899 |
N |
O |
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| THR | B:16 | B:16 | 33.0 | 0.236 | H | -51.2 | -43.8 | NA | NA | NA | |||||||||||||
| THR | C:16 | E:16 | 34.0 | 0.243 | H | -41.5 | -54.5 | NA | NA | NA | |||||||||||||
| 6a8p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2018-09-26 | THR | A:16 | A:16 | 45.0 | 0.321 | H | -66.2 | -46.2 | 45.0 | 0.321 | 0.0 | ||||||
| THR | B:16 | B:16 | 40.0 | 0.286 | H | -64.4 | -46.4 | NA | NA | NA | |||||||||||||
| THR | C:16 | C:16 | 44.0 | 0.314 | H | -64.7 | -46.1 | NA | NA | NA | |||||||||||||
| 6kzb | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2020-12-09 | THR | A:16 | A:16 | 82.0 | 0.586 | H | -66.1 | -30.9 | 82.0 | 0.586 | 0.0 | ||||||
| THR | B:16 | B:16 | 106.0 | 0.757 | G | -59.3 | -38.0 | NA | NA | NA | |||||||||||||
| THR | C:16 | C:16 | 29.0 | 0.207 | H | -62.8 | -17.7 | NA | NA | NA | |||||||||||||
| 3s3j | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | THR | A:23 | A:16 | 52.0 | 0.371 | H | -69.8 | -33.2 | 52.0 | 0.371 | 0.0 |
HOH |
2.888 |
OG1 |
O |
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| 3s3p | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | THR | A:23 | A:16 | 46.0 | 0.329 | H | -67.1 | -33.3 | 46.0 | 0.329 | 0.0 |
HOH |
3.169 |
CG2 |
O |
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| 3s3s | 1 | P21980 | 100.0 | 0.0 |
X-RAY |
2012-06-06 | THR | A:23 | A:16 | 49.0 | 0.35 | H | -78.0 | -38.7 | 49.0 | 0.35 | 0.0 |
HOH |
3.247 |
OG1 |
O |
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| 3ly6 | 1 | P21980 | 99.85 | 0.0 |
X-RAY |
2010-08-18 | THR | A:16 | A:16 | 39.0 | 0.279 | H | -70.4 | -10.3 | 39.0 | 0.279 | 0.0 | ||||||
| THR | B:16 | B:16 | 38.0 | 0.271 | H | -70.7 | -10.6 | NA | NA | NA | |||||||||||||
| THR | C:16 | C:16 | 38.0 | 0.271 | H | -70.3 | -10.1 | NA | NA | NA | |||||||||||||
| 1kv3 | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2002-03-13 | THR | A:16 | A:16 | 71.0 | 0.507 | H | -68.0 | -0.4 | 71.0 | 0.507 | 0.0 |
HOH |
4.593 |
CB |
O |
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| THR | B:16 | B:16 | 71.0 | 0.507 | H | -67.2 | 0.3 | NA | NA | NA | |||||||||||||
| THR | C:16 | C:16 | 71.0 | 0.507 | H | -69.1 | 2.5 | 71.0 | 0.507 | 0.0 |
HOH |
4.712 |
N |
O |
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| THR | D:16 | D:16 | 70.0 | 0.5 | H | -68.5 | 2.0 | NA | NA | NA | |||||||||||||
| THR | E:16 | E:16 | 69.0 | 0.493 | H | -68.5 | 3.2 | NA | NA | NA | |||||||||||||
| THR | F:16 | F:16 | 71.0 | 0.507 | H | -67.8 | 1.8 | NA | NA | NA | |||||||||||||
| 2q3z | 1 | P21980 | 99.27 | 0.0 |
X-RAY |
2007-10-23 | THR | A:16 | A:16 | 46.0 | 0.329 | H | -74.0 | -40.0 | 46.0 | 0.329 | 0.0 |
HOH |
3.154 |
N |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p21980-f1 | 1 | P21980 | 100.0 | 0.0 | THR | A:16 | A:16 | 43.0 | 0.307 | H | -61.8 | -51.4 | |