Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 43034827 . G A CCDS42876.1:NM_175914.4:c.179gGc>gAc_NP_787110.2:p.60G>D Homo sapiens hepatocyte nuclear factor 4 alpha (HNF4A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4iqr 1 P41235 97.58 0.0 X-RAY
 2013-03-20 GLY A:43 A:73 7.0 0.093 H -65.3 -41.0 7.0 0.093 0.0 DA
DG
DG
DT
DC
DT
DT
DG
DA
DC
DC
ZN
 8.931
8.276
6.725
6.709
9.035
8.242
6.393
5.157
6.649
7.608
9.450
8.472
 N
CA
CA
CA
O
O
O
CA
CA
N
N
N
 OP2
OP2
O6
O4
N4
C2'
OP2
N7
N6
N4
N4
ZN
GLY B:43 B:73 8.0 0.107 H -57.3 -36.3 8.0 0.107 0.0 DA
DG
DG
DT
DC
DC
DT
DG
DA
DC
ZN
 9.037
7.726
7.129
7.302
9.736
7.950
6.112
4.970
6.496
7.823
8.308
 N
CA
CA
CA
CA
O
O
CA
CA
N
N
 OP2
OP2
O6
O4
N4
C2'
OP2
N7
N6
N4
ZN
GLY E:43 E:73 7.0 0.093 H -64.2 -36.5 NA NA NA
GLY F:43 F:73 9.0 0.12 H -60.3 -42.0 NA NA NA
3cbb 3 P41235 100.0 2e-56 X-RAY
 2008-10-07 GLY C:25 A:73 5.0 0.067 H -64.0 -40.2 5.0 0.067 0.0 DA
DG
DT
DC
DC
DT
DT
DG
DG
DA
ZN
HOH
 9.558
7.798
6.924
7.142
8.976
7.988
6.070
4.935
6.359
7.928
8.383
3.469
 N
CA
CA
CA
CA
O
O
CA
CA
CA
N
CA
 OP2
OP2
O4
N4
N4
C2'
OP2
N7
O6
N6
ZN
O
GLY D:25 B:73 4.0 0.053 H -61.8 -43.4 4.0 0.053 0.0 DA
DG
DT
DT
DC
DC
DT
DG
DA
DA
ZN
HOH
 9.444
7.902
7.017
7.404
9.083
8.011
6.023
4.953
6.298
8.083
8.246
4.091
 N
CA
CA
CA
CA
O
O
CA
CA
CA
N
C
 OP2
OP2
O4
O4
N4
C2'
OP2
N7
N6
N6
ZN
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p41235-f1 1 P41235 97.68 0.0 GLY A:82 A:82 8.0 0.107 H -64.7 -36.2