Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 43036061 . C A CCDS42876.1:NM_175914.4:c.265Cag>Aag_NP_787110.2:p.89Q>K Homo sapiens hepatocyte nuclear factor 4 alpha (HNF4A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4iqr 1 P41235 97.58 0.0 X-RAY
 2013-03-20 GLN A:72 A:102 127.0 0.706 S -74.3 -21.5 90.0 0.5 0.206 B:P41235:0.206
 DG
DG
DT
DT
DG
ZN
 8.761
7.934
8.811
7.357
8.306
6.326
 N
CA
N
N
N
O
 O3'
OP1
O3'
OP1
OP1
ZN
GLN B:72 B:102 142.0 0.789 S -63.6 -54.4 142.0 0.789 0.0 DC
DT
DG
ZN
 9.439
7.150
8.161
6.332
 N
N
N
C
 O3'
OP1
OP1
ZN
GLN E:72 E:102 125.0 0.694 S -81.8 -25.1 NA NA NA
GLN F:72 F:102 144.0 0.8 T -46.8 -53.1 NA NA NA
3cbb 3 P41235 100.0 2e-56 X-RAY
 2008-10-07 GLN C:54 A:102 152.0 0.844 T -78.7 -30.2 61.0 0.339 0.505 D:P41235:0.506
 DA
DG
DT
DT
DT
DG
ZN
HOH
 9.730
7.254
7.004
8.983
7.298
8.234
6.407
2.874
 OE1
OE1
NE2
N
N
N
O
O
 O3'
O3'
OP1
O3'
OP1
OP1
ZN
O
GLN D:54 B:102 141.0 0.783 T -77.4 -35.8 141.0 0.783 0.0 DC
DT
DG
ZN
HOH
 8.972
7.206
8.053
6.491
4.232
 N
N
N
C
N
 O3'
OP1
OP1
ZN
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p41235-f1 1 P41235 97.68 0.0 GLN A:111 A:111 145.0 0.806 S -66.6 -35.4