Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 43042339 . C A CCDS42876.1:NM_175914.4:c.325Cag>Aag_NP_787110.2:p.109Q>K Homo sapiens hepatocyte nuclear factor 4 alpha (HNF4A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4iqr 1 P41235 97.58 0.0 X-RAY
 2013-03-20 GLN A:92 A:122 160.0 0.889 -103.8 159.6 160.0 0.889 0.0 DT
DA
DG
DG
DA
DG
DT
 7.387
3.104
2.842
5.865
9.920
8.652
9.636
 NE2
NE2
O
O
NE2
NE2
NE2
 O3'
O3'
OP1
OP2
C2
O4'
O4'
GLN B:92 B:122 112.0 0.622 -86.1 -171.0 112.0 0.622 0.0 DA
DA
DA
DG
DG
DT
DT
DG
 9.379
6.546
2.944
2.922
6.827
8.441
7.101
7.164
 OE1
OE1
OE1
N
O
NE2
NE2
NE2
 C2
O3'
C4'
OP1
OP2
O2
O3'
OP1
GLN E:92 E:122 159.0 0.883 -68.7 177.1 NA NA NA
GLN F:92 F:122 120.0 0.667 -104.1 164.0 NA NA NA
3cbb 3 P41235 100.0 2e-56 X-RAY
 2008-10-07 GLN C:74 A:122 155.0 0.861 -95.5 163.8 155.0 0.861 0.0 DG
DA
DA
DG
DT
DT
DC
HOH
 9.048
6.562
3.521
2.666
6.343
8.488
7.063
2.651
 NE2
NE2
CD
N
O
NE2
OE1
OE1
 N2
O3'
O3'
OP1
OP2
O2
C4'
O
GLN D:74 B:122 120.0 0.667 -89.3 169.4 114.0 0.633 0.034 C:P41235:0.033
 DA
DA
DA
DG
DT
DT
DT
DG
DG
HOH
 9.618
6.565
3.548
2.609
6.252
8.204
6.170
6.410
9.074
3.155
 NE2
NE2
CD
N
O
OE1
OE1
OE1
NE2
NE2
 C2
O3'
O3'
OP1
OP2
O2
O3'
OP1
OP1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p41235-f1 1 P41235 97.68 0.0 GLN A:131 A:131 122.0 0.678 -56.4 156.9