Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr21 | 34876559 | . | C | A | CCDS13627.1:NM_000819.4:c.2905Gtc>Ttc_NP_000810.1:p.969V>F | Homo sapiens phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase (GART), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zlx | 1 | P22102 | 100.0 | 3e-138 |
X-RAY |
2005-08-23 | VAL | A:162 | A:162 | 55.0 | 0.355 | H | -59.7 | -38.1 | 55.0 | 0.355 | 0.0 |
HOH |
3.694 |
CG1 |
O |
||
1zly | 1 | P22102 | 100.0 | 3e-138 |
X-RAY |
2005-08-23 | VAL | A:162 | A:162 | 62.0 | 0.4 | H | -54.3 | -38.9 | 62.0 | 0.4 | 0.0 |
GRF HOH |
8.955 4.287 |
O CG1 |
O3 O |
||
1meo | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2002-12-18 | VAL | A:162 | A:162 | 57.0 | 0.368 | H | -55.1 | -40.5 | 57.0 | 0.368 | 0.0 |
SO4 HOH |
9.490 3.398 |
O N |
O4 O |
||
1njs | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2003-06-10 | VAL | A:162 | A:162 | 76.0 | 0.49 | H | -55.7 | -44.3 | 76.0 | 0.49 | 0.0 |
PO4 HOH |
9.543 2.960 |
O N |
O3 O |
||
VAL | B:162 | B:162 | 75.0 | 0.484 | H | -57.7 | -41.9 | NA | NA | NA | |||||||||||||
1rbm | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2005-06-14 | VAL | A:162 | A:162 | 55.0 | 0.355 | H | -55.1 | -41.7 | 55.0 | 0.355 | 0.0 |
PO4 HOH |
9.650 3.092 |
O N |
O3 O |
||
VAL | B:162 | B:162 | 73.0 | 0.471 | H | -57.6 | -45.4 | NA | NA | NA | |||||||||||||
1rbq | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2005-06-14 | VAL | A:162 | A:162 | 76.0 | 0.49 | H | -54.6 | -43.4 | 76.0 | 0.49 | 0.0 |
PO4 HOH |
9.646 3.007 |
O N |
O2 O |
||
VAL | B:162 | B:162 | 74.0 | 0.477 | H | -57.2 | -46.6 | NA | NA | NA | |||||||||||||
VAL | C:162 | C:162 | 75.0 | 0.484 | H | -53.3 | -46.1 | NA | NA | NA | |||||||||||||
VAL | D:162 | D:162 | 74.0 | 0.477 | H | -55.6 | -47.1 | NA | NA | NA | |||||||||||||
1rby | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2005-06-14 | VAL | A:162 | A:162 | 73.0 | 0.471 | H | -54.2 | -45.4 | 73.0 | 0.471 | 0.0 |
GAR HOH |
9.774 2.993 |
O N |
C1 O |
||
VAL | B:162 | B:162 | 71.0 | 0.458 | H | -59.1 | -43.7 | NA | NA | NA | |||||||||||||
VAL | C:162 | C:162 | 56.0 | 0.361 | H | -55.3 | -45.4 | NA | NA | NA | |||||||||||||
VAL | D:162 | D:162 | 53.0 | 0.342 | H | -55.2 | -45.4 | NA | NA | NA | |||||||||||||
1rbz | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2005-06-14 | VAL | A:162 | A:162 | 75.0 | 0.484 | H | -61.8 | -40.3 | 75.0 | 0.484 | 0.0 |
KT5 HOH |
6.838 3.332 |
CG1 N |
OED O |
||
VAL | B:162 | B:162 | 76.0 | 0.49 | H | -61.8 | -40.4 | NA | NA | NA | |||||||||||||
1rc0 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2005-06-14 | VAL | A:162 | A:162 | 73.0 | 0.471 | H | -56.8 | -42.4 | 73.0 | 0.471 | 0.0 |
HOH |
3.171 |
N |
O |
||
VAL | B:162 | B:162 | 77.0 | 0.497 | H | -57.6 | -43.2 | NA | NA | NA | |||||||||||||
1rc1 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2005-06-14 | VAL | A:162 | A:162 | 72.0 | 0.465 | H | -54.4 | -45.8 | 72.0 | 0.465 | 0.0 |
HOH |
3.647 |
N |
O |
||
VAL | B:162 | B:162 | 76.0 | 0.49 | H | -55.9 | -43.9 | NA | NA | NA | |||||||||||||
4ew1 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2013-07-31 | VAL | A:162 | A:162 | 64.0 | 0.413 | H | -49.3 | -45.0 | 64.0 | 0.413 | 0.0 |
SO4 SO4 SO4 HOH |
9.583 6.824 3.051 2.920 |
O CG1 CG1 N |
O1 O1 O2 O |
||
4ew2 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2013-07-31 | VAL | A:162 | A:162 | 67.0 | 0.432 | H | -48.9 | -44.5 | 67.0 | 0.432 | 0.0 |
SO4 SO4 HOH |
9.565 2.943 3.052 |
O CG1 N |
O1 O2 O |
||
4ew3 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2013-07-31 | VAL | A:162 | A:162 | 64.0 | 0.413 | H | -50.1 | -42.0 | 64.0 | 0.413 | 0.0 |
SO4 SO4 HOH |
9.681 2.797 2.933 |
O CG1 N |
O1 O2 O |
||
4zyt | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -54.0 | -40.4 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.730 3.676 |
O CG1 |
O6 O |
||
4zyu | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -53.4 | -42.0 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.960 3.838 |
O CG2 |
O6 O |
||
4zyv | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 62.0 | 0.4 | H | -53.5 | -39.8 | 62.0 | 0.4 | 0.0 |
GAR HOH |
8.801 3.809 |
O CG2 |
O6 O |
||
4zyw | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -55.6 | -41.6 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.715 3.839 |
O CG2 |
O6 O |
||
4zyx | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 60.0 | 0.387 | H | -53.2 | -41.1 | 60.0 | 0.387 | 0.0 |
GAR HOH |
8.756 3.814 |
O CG1 |
O6 O |
||
4zyy | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 62.0 | 0.4 | H | -54.4 | -40.6 | 62.0 | 0.4 | 0.0 |
GAR HOH |
8.758 3.778 |
O CG2 |
O6 O |
||
4zyz | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -53.4 | -41.8 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.834 3.883 |
O CG2 |
O6 O |
||
4zz0 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2016-04-20 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -53.5 | -41.1 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.777 3.708 |
O CG1 |
O6 O |
||
4zz1 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2015-12-16 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -54.8 | -39.2 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.644 3.576 |
O CG1 |
O6 O |
||
4zz2 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2015-12-16 | VAL | A:163 | A:969 | 62.0 | 0.4 | H | -54.6 | -39.3 | 62.0 | 0.4 | 0.0 |
GAR HOH |
8.703 4.206 |
O CG2 |
O6 O |
||
4zz3 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2015-12-16 | VAL | A:163 | A:969 | 59.0 | 0.381 | H | -62.9 | -35.2 | 59.0 | 0.381 | 0.0 |
GAR HOH |
9.270 4.006 |
O CG1 |
O6 O |
||
7jg0 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2021-03-31 | VAL | A:163 | A:968 | 64.0 | 0.413 | H | -49.1 | -42.3 | 64.0 | 0.413 | 0.0 |
GAR HOH |
8.606 4.300 |
CG1 CG2 |
H5 O |
||
7jg3 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2021-03-31 | VAL | A:163 | A:969 | 63.0 | 0.406 | H | -47.0 | -45.7 | 63.0 | 0.406 | 0.0 |
GAR HOH |
8.735 5.579 |
O O |
O6 O |
||
7jg4 | 1 | P22102 | 100.0 | 5e-138 |
X-RAY |
2021-03-31 | VAL | A:163 | A:969 | 61.0 | 0.394 | H | -54.2 | -41.2 | 61.0 | 0.394 | 0.0 |
GAR HOH |
8.805 4.174 |
O CG1 |
O6 O |
||
5j9f | 1 | P22102 | 99.51 | 4e-137 |
X-RAY |
2016-08-10 | VAL | A:163 | A:969 | 62.0 | 0.4 | H | -50.3 | -44.4 | 62.0 | 0.4 | 0.0 |
GAR HOH |
8.878 4.186 |
O CG1 |
O6 O |
||
1mej | 1 | P22102 | 100.0 | 3e-136 |
X-RAY |
2002-12-18 | VAL | A:173 | B:162 | 63.0 | 0.406 | H | -61.5 | -34.9 | 63.0 | 0.406 | 0.0 |
HOH |
4.187 |
CG1 |
O |
||
VAL | B:173 | A:162 | 62.0 | 0.4 | H | -56.9 | -39.6 | NA | NA | NA | |||||||||||||
VAL | C:173 | C:162 | 64.0 | 0.413 | H | -59.3 | -37.7 | NA | NA | NA | |||||||||||||
1men | 1 | P22102 | 100.0 | 3e-136 |
X-RAY |
2002-12-18 | VAL | A:173 | A:162 | 59.0 | 0.381 | H | -57.9 | -40.6 | 59.0 | 0.381 | 0.0 |
GAR HOH |
9.393 5.931 |
O N |
O6 O |
||
VAL | B:173 | B:162 | 59.0 | 0.381 | H | -62.0 | -37.4 | NA | NA | NA | |||||||||||||
VAL | C:173 | C:162 | 66.0 | 0.426 | H | -59.6 | -27.1 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p22102-f1 | 1 | P22102 | 100.0 | 0.0 | VAL | A:969 | A:969 | 56.0 | 0.361 | H | -52.2 | -39.3 |