Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr21 42622737 . C A CCDS13668.1:NM_012105.4:c.1043tCg>tAg_NP_036237.2:p.348S>* Homo sapiens beta-site APP-cleaving enzyme 2 (BACE2), transcript variant a, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uj0 1 Q9Y5Z0 99.78 0.0 X-RAY
2020-10-07 SER A:348 A:286 153.0 1.0 360.0 -67.5 153.0 1.0 0.0 HOH
7.686
N
O
SER B:348 B:286 116.0 1.0 T -81.1 13.8 NA NA NA
6uj1 1 Q9Y5Z0 99.78 0.0 X-RAY
2020-10-07 SER A:348 A:286 88.0 0.765 T -63.9 -44.7 88.0 0.765 0.0
SER B:348 NA:NA DO NA DO DO DO NA NA NA
3zkm 1 Q9Y5Z0 100.0 0.0 X-RAY
2013-05-29 SER A:274 A:286 125.0 1.0 T 56.2 4.6 125.0 1.0 0.0 HOH
6.357
N
O
SER B:274 B:286 120.0 1.0 T 64.0 -1.5 NA NA NA
3zkn 1 Q9Y5Z0 100.0 0.0 X-RAY
2013-05-29 SER A:274 A:286 127.0 1.0 T 57.7 12.8 NA NA NA
SER B:274 B:286 124.0 1.0 T 62.0 -4.9 124.0 1.0 0.0 HOH
6.532
N
O
3zkq 1 Q9Y5Z0 100.0 0.0 X-RAY
2013-05-29 SER A:274 A:286 111.0 0.965 T 57.0 34.3 111.0 0.965 0.0 HOH
8.408
N
O
3zks 1 Q9Y5Z0 100.0 0.0 X-RAY
2013-05-29 SER A:274 NA:NA DO NA DO DO DO NA NA NA
4bel 1 Q9Y5Z0 100.0 0.0 X-RAY
2013-05-29 SER A:274 NA:NA DO NA DO DO DO NA NA NA
SER B:274 NA:NA DO NA DO DO DO NA NA NA
4bfb 1 Q9Y5Z0 100.0 0.0 X-RAY
2013-05-29 SER A:274 A:286 115.0 1.0 G -67.7 -16.5 115.0 1.0 0.0 HOH
5.777
N
O
SER B:274 B:286 106.0 0.922 T -64.9 -51.9 NA NA NA
6jsz 1 Q9Y5Z0 100.0 0.0 X-RAY
2019-08-28 SER A:274 NA:NA DO NA DO DO DO NA NA NA
7d5b 1 Q9Y5Z0 100.0 0.0 X-RAY
2021-03-31 SER A:274 NA:NA DO NA DO DO DO NA NA NA
7d5u 1 Q9Y5Z0 100.0 0.0 X-RAY
2021-03-31 SER A:274 A:286 92.0 0.8 S -74.1 -68.9 92.0 0.8 0.0
7n4n 1 Q9Y5Z0 100.0 0.0 X-RAY
2021-10-06 SER A:274 NA:NA DO NA DO DO DO NA NA NA
3zkg 1 Q9Y5Z0 99.74 0.0 X-RAY
2013-05-29 SER A:274 NA:NA DO NA DO DO DO NA NA NA
SER B:274 NA:NA DO NA DO DO DO NA NA NA
3zki 1 Q9Y5Z0 99.74 0.0 X-RAY
2013-05-29 SER A:274 NA:NA DO NA DO DO DO NA NA NA
SER B:274 NA:NA DO NA DO DO DO NA NA NA
3zkx 1 Q9Y5Z0 99.74 0.0 X-RAY
2013-05-29 SER A:274 A:286 102.0 0.887 T -105.0 6.2 102.0 0.887 0.0 HOH
3.770
C
O
3zl7 1 Q9Y5Z0 99.74 0.0 X-RAY
2013-05-29 SER A:274 A:286 85.0 0.739 T 53.3 14.0 85.0 0.739 0.0
3zlq 1 Q9Y5Z0 99.74 0.0 X-RAY
2013-05-01 SER A:274 A:286 113.0 0.983 T -82.7 -13.3 113.0 0.983 0.0 HOH
7.037
N
O
SER B:274 B:286 106.0 0.922 G -71.3 -15.5 106.0 0.922 0.0 HOH
6.542
OG
O
2ewy 1 Q9Y5Z0 100.0 0.0 X-RAY
2006-11-07 SER A:271 A:286 79.0 0.687 S -70.1 -18.7 79.0 0.687 0.0 HOH
4.609
CB
O
SER B:271 B:286 77.0 0.67 S -70.2 -18.6 NA NA NA
SER C:271 C:286 79.0 0.687 S -70.1 -18.8 NA NA NA
SER D:271 D:286 81.0 0.704 S -70.1 -18.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y5z0-f1 1 Q9Y5Z0 100.0 0.0 SER A:348 A:348 82.0 0.713 T 59.9 20.5