Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr21 44188346 . C A CCDS13690.1:NM_002606.2:c.1405Cca>Aca_NP_002597.1:p.469P>T Homo sapiens phosphodiesterase 9A (PDE9A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4qge 1 K7AGW3 84.65 0.0 X-RAY
 2014-12-10 PRO A:409 A:409 35.0 0.241 -54.3 141.1 35.0 0.241 0.0 HOH
 3.276
 CD
 O
PRO B:409 B:409 40.0 0.276 -49.0 139.0 40.0 0.276 0.0 HOH
 3.245
 CD
 O
4y86 1 O76083 84.65 0.0 X-RAY
 2015-09-16 PRO A:409 A:409 37.0 0.255 -56.4 145.4 37.0 0.255 0.0 HOH
 3.272
 N
 O
PRO B:409 B:409 42.0 0.29 -56.0 144.2 42.0 0.29 0.0 HOH
 3.307
 N
 O
4y87 1 O76083 84.65 0.0 X-RAY
 2015-09-16 PRO A:409 A:409 51.0 0.352 -50.8 146.5 51.0 0.352 0.0
PRO B:409 B:409 43.0 0.297 -45.8 145.6 43.0 0.297 0.0
4y8c 1 O76083 84.65 0.0 X-RAY
 2015-09-16 PRO A:409 A:409 37.0 0.255 -56.7 150.8 37.0 0.255 0.0
PRO B:409 B:409 40.0 0.276 -51.6 144.8 40.0 0.276 0.0
3qi3 1 O76083 84.49 0.0 X-RAY
 2011-04-27 PRO A:409 A:409 39.0 0.269 -51.9 140.7 39.0 0.269 0.0 HOH
 9.758
 O
 O
PRO B:409 B:409 47.0 0.324 -54.8 142.3 NA NA NA
3qi4 1 O76083 84.49 0.0 X-RAY
 2011-04-27 PRO A:409 A:409 34.0 0.234 -54.0 145.7 34.0 0.234 0.0 HOH
 8.529
 CD
 O
PRO B:409 B:409 51.0 0.352 -53.2 140.0 51.0 0.352 0.0 HOH
 8.645
 CD
 O
2yy2 1 O76083 100.0 0.0 X-RAY
 2007-10-30 PRO A:236 A:409 42.0 0.29 -61.0 138.0 42.0 0.29 0.0 HOH
 4.374
 C
 O
PRO B:236 B:409 37.0 0.255 -51.3 135.2 37.0 0.255 0.0 HOH
 4.600
 C
 O
2hd1 1 Q53Y40 100.0 0.0 X-RAY
 2006-06-27 PRO A:229 A:409 40.0 0.276 -51.9 142.1 40.0 0.276 0.0 HOH
 3.321
 CD
 O
PRO B:229 B:409 43.0 0.297 -50.4 141.0 NA NA NA
3k3e 1 O76083 100.0 0.0 X-RAY
 2010-02-16 PRO A:229 A:409 39.0 0.269 -56.9 140.9 39.0 0.269 0.0 HOH
 9.741
 O
 O
PRO B:229 B:409 51.0 0.352 -56.3 147.4 51.0 0.352 0.0
3k3h 1 O76083 100.0 0.0 X-RAY
 2010-02-16 PRO A:229 A:409 40.0 0.276 -52.7 144.6 40.0 0.276 0.0 HOH
 9.809
 O
 O
PRO B:229 B:409 43.0 0.297 -53.5 141.5 43.0 0.297 0.0
4gh6 1 O76083 100.0 0.0 X-RAY
 2012-10-03 PRO A:229 A:409 40.0 0.276 -56.1 136.9 40.0 0.276 0.0
PRO B:229 B:409 35.0 0.241 -51.8 134.6 35.0 0.241 0.0
3n3z 1 O76083 99.69 0.0 X-RAY
 2011-04-13 PRO A:229 A:409 56.0 0.386 -61.0 148.9 56.0 0.386 0.0 HOH
 7.466
 O
 O
PRO B:229 B:409 44.0 0.303 -52.7 146.7 44.0 0.303 0.0 HOH
 7.334
 CB
 O
3dy8 1 O76083 100.0 0.0 X-RAY
 2008-09-16 PRO A:232 A:409 40.0 0.276 -52.1 144.0 40.0 0.276 0.0 HOH
 3.364
 CD
 O
PRO B:232 B:409 42.0 0.29 -50.5 145.4 NA NA NA
3dyl 1 O76083 100.0 0.0 X-RAY
 2008-09-16 PRO A:232 A:409 42.0 0.29 -49.3 146.0 42.0 0.29 0.0 HOH
 2.994
 N
 O
PRO B:232 B:409 42.0 0.29 -48.8 148.8 NA NA NA
3dyn 1 O76083 100.0 0.0 X-RAY
 2008-09-16 PRO A:232 A:409 34.0 0.234 -50.7 141.5 34.0 0.234 0.0 HOH
 3.098
 CD
 O
PRO B:232 B:409 36.0 0.248 -52.0 145.1 NA NA NA
3dyq 1 O76083 100.0 0.0 X-RAY
 2008-09-16 PRO A:232 A:409 39.0 0.269 -51.4 145.4 39.0 0.269 0.0 HOH
 3.160
 N
 O
PRO B:232 B:409 42.0 0.29 -46.6 143.4 42.0 0.29 0.0 HOH
 3.359
 CD
 O
3dys 1 O76083 100.0 0.0 X-RAY
 2008-09-16 PRO A:232 A:409 41.0 0.283 -51.3 146.0 41.0 0.283 0.0 HOH
 3.299
 CD
 O
PRO B:232 B:409 43.0 0.297 -51.3 150.1 43.0 0.297 0.0 HOH
 3.221
 N
 O
3jsi 1 O76083 100.0 0.0 X-RAY
 2009-12-01 PRO A:232 A:409 38.0 0.262 -53.7 145.1 38.0 0.262 0.0 HOH
 3.322
 CD
 O
PRO B:232 B:409 38.0 0.262 -53.9 146.1 NA NA NA
3jsw 1 O76083 100.0 0.0 X-RAY
 2009-12-01 PRO A:232 A:409 42.0 0.29 -50.9 141.5 42.0 0.29 0.0 HOH
 3.349
 CD
 O
PRO B:232 B:409 42.0 0.29 -49.9 144.9 42.0 0.29 0.0 HOH
 3.457
 CD
 O
4e90 1 O76083 100.0 0.0 X-RAY
 2013-02-27 PRO A:232 A:409 41.0 0.283 -54.0 144.3 41.0 0.283 0.0 HOH
 3.415
 CD
 O
PRO B:232 B:409 43.0 0.297 -54.7 144.3 NA NA NA
4g2j 1 O76083 100.0 0.0 X-RAY
 2013-05-29 PRO A:232 A:409 42.0 0.29 -54.7 144.0 42.0 0.29 0.0 HOH
 3.414
 CD
 O
PRO B:232 B:409 41.0 0.283 -54.3 143.7 NA NA NA
4g2l 1 O76083 100.0 0.0 X-RAY
 2013-05-29 PRO A:232 A:409 42.0 0.29 -46.3 148.9 42.0 0.29 0.0
PRO B:232 B:409 49.0 0.338 -43.3 150.8 NA NA NA
6a3n 1 O76083 100.0 0.0 X-RAY
 2019-04-10 PRO A:225 A:409 45.0 0.31 -57.1 150.5 45.0 0.31 0.0 HOH
 3.263
 N
 O
PRO B:225 B:409 43.0 0.297 -49.6 137.2 43.0 0.297 0.0 HOH
 3.735
 CD
 O
6lzz 1 O76083 100.0 0.0 X-RAY
 2021-02-24 PRO A:225 A:409 37.0 0.255 -62.7 141.0 37.0 0.255 0.0 HOH
 3.420
 CD
 O
PRO B:225 B:409 49.0 0.338 -63.8 156.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o76083-f1 1 O76083 100.0 0.0 PRO A:469 A:469 45.0 0.31 -50.5 148.2