Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr21 46233931 . G A CCDS33587.1:NM_006936.2:c.110aCg>aTg_NP_008867.2:p.37T>M Homo sapiens small ubiquitin-like modifier 3 (SUMO3), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2io1 2 P55854 100.0 2e-64 X-RAY
 2006-11-14 THR B:28 B:37 38.0 0.271 S -93.3 129.4 38.0 0.271 0.0 HOH
 3.450
 OG1
 O
THR D:28 D:37 29.0 0.207 S -102.0 125.0 NA NA NA
THR F:28 F:37 48.0 0.343 S -102.0 120.7 NA NA NA
2n9e 2 P61956 96.81 3e-63 NMR
 2016-01-20 THR B:38 B:38 35.0 0.25 S -72.9 135.3 0.0 0.0 0.25 A:Q96RL1:0.25
6jxw 1 P61956 96.81 3e-63 NMR
 2020-02-05 THR A:38 A:38 36.0 0.257 S -86.9 120.8 1.0 0.007 0.25 B:None:0.25
6jxx 1 P61956 96.81 3e-63 NMR
 2020-02-05 THR A:38 A:38 34.0 0.243 S -69.1 128.4 0.0 0.0 0.243 B:None:0.243
2mp2 2 P55854 100.0 1e-62 NMR
 2014-07-02 THR B:37 B:37 37.0 0.264 S -87.3 130.3 6.0 0.043 0.221 C:Q9QZS2:0.221
2d07 2 P61956 96.77 2e-62 X-RAY
 2006-06-06 THR B:38 B:38 26.0 0.186 S -90.7 134.3 11.0 0.079 0.107 A:Q13569:0.107
 HOH
 2.526
 OG1
 O
2rpq 1 P61956 96.77 2e-62 NMR
 2008-10-07 THR A:38 A:38 26.0 0.186 S -61.6 131.7 0.0 0.0 0.186 B:Q6VMQ6:0.186
2n1w 1 P61956 96.77 4e-62 NMR
 2016-04-20 THR A:52 A:38 41.0 0.293 S -85.9 133.1 41.0 0.293 0.0
5ghb 1 P61956 96.77 4e-62 NMR
 2017-06-07 THR A:52 A:38 28.0 0.2 S -91.6 128.3 28.0 0.2 0.0
5ghc 1 P61956 96.77 4e-62 NMR
 2017-06-07 THR A:52 A:38 30.0 0.214 S -86.7 132.3 30.0 0.214 0.0
2mp2 1 P55854 100.0 6e-57 NMR
 2014-07-02 THR A:27 A:27 30.0 0.214 S -109.9 140.0 1.0 0.007 0.207 C:Q9QZS2:0.207
5tvq 2 P61957 98.81 9e-57 X-RAY
 2017-09-27 THR B:31 B:38 35.0 0.25 S -84.1 134.0 12.0 0.086 0.164 A:Q9JJX7:0.164
 HOH
 2.794
 OG1
 O
2io0 2 P61956 100.0 2e-56 X-RAY
 2006-11-14 THR B:26 B:38 21.0 0.15 S -88.3 129.1 21.0 0.15 0.0 HOH
 5.800
 N
 O
3zo5 2 P61956 100.0 3e-56 X-RAY
 2014-01-29 THR B:26 B:38 26.0 0.186 S -72.1 142.7 26.0 0.186 0.0
2iyd 2 P61956 100.0 3e-56 X-RAY
 2006-08-08 THR B:24 B:37 48.0 0.343 S -77.9 146.1 48.0 0.343 0.0
4npn 1 P61956 98.75 8e-56 X-RAY
 2014-10-15 THR A:46 A:38 40.0 0.286 S -95.1 136.0 40.0 0.286 0.0 HOH
 4.567
 N
 O
2io3 2 P61956 100.0 1e-55 X-RAY
 2006-11-14 THR B:26 B:38 26.0 0.186 -76.1 140.3 26.0 0.186 0.0
2ckh 2 P61956 100.0 1e-55 X-RAY
 2006-04-26 THR B:24 B:37 38.0 0.271 S -91.5 138.4 38.0 0.271 0.0
3uin 2 P61956 100.0 2e-55 X-RAY
 2011-12-28 THR B:25 B:38 19.0 0.136 S -84.8 125.0 8.0 0.057 0.079 D:P49792:0.079
3uio 2 P61956 100.0 2e-55 X-RAY
 2011-12-28 THR B:25 B:38 38.0 0.271 S -79.9 129.8 19.0 0.136 0.135 D:P49792:0.136
5d2m 2 P61956 100.0 2e-55 X-RAY
 2015-11-04 THR B:28 B:38 24.0 0.171 S -106.9 124.1 15.0 0.107 0.064 G:Q9Y4E5:0.064
THR E:28 E:38 27.0 0.193 S -78.9 130.5 25.0 0.179 0.014 G:Q9Y4E5:0.014
 HOH
 2.061
 HG1
 O
4bkg 1 P61956 95.24 1e-54 X-RAY
 2013-11-06 THR A:29 A:38 35.0 0.25 S -90.5 138.2 35.0 0.25 0.0 HOH
 2.623
 OG1
 O
4bkg 1 P61956 96.47 2e-54 X-RAY
 2013-11-06 THR A:113 NA:NA DO NA DO DO DO NA NA NA
6nnq 2 P55854 100.0 2e-54 X-RAY
 2019-05-08 THR B:23 B:38 47.0 0.336 S -112.6 138.5 47.0 0.336 0.0 HOH
 5.125
 C
 O
6k5r 1 P55854 100.0 1e-53 NMR
 2019-08-07 THR A:23 A:38 27.0 0.193 S -75.9 121.9 0.0 0.0 0.193 B:P19893:0.193
5tvp 3 P61957 97.5 6e-53 X-RAY
 2017-10-11 THR E:31 Q:38 25.0 0.179 S -69.3 129.0 NA NA NA
1wm2 1 P61956 100.0 2e-52 X-RAY
 2004-11-30 THR A:27 A:38 28.0 0.2 S -86.1 133.8 28.0 0.2 0.0 HOH
 2.837
 OG1
 O
5elu 2 P61956 100.0 2e-52 X-RAY
 2016-11-16 THR B:26 B:38 28.0 0.2 S -82.7 133.8 28.0 0.2 0.0 HOH
 3.369
 OG1
 O
5eql 2 P61956 100.0 2e-52 X-RAY
 2016-11-23 THR B:26 B:38 29.0 0.207 S -86.7 134.9 24.0 0.171 0.036 A:None:0.036
1wm3 1 P61956 100.0 6e-50 X-RAY
 2004-11-30 THR A:22 A:38 43.0 0.307 S -94.2 138.2 43.0 0.307 0.0 HOH
 2.786
 OG1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55854-f1 1 P55854 100.0 1e-74 THR A:37 A:37 34.0 0.243 S -86.9 134.5
af-p61956-f1 1 P61956 96.81 1e-63 THR A:38 A:38 45.0 0.321 S -91.1 136.2
af-q6eev6-f1 1 Q6EEV6 84.04 3e-52 THR A:38 A:38 31.0 0.221 S -81.6 136.7