Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229781 . C A CCDS13777.1:NM_023004.5:c.875cGc>cTc_NP_075380.1:p.292R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 158.0 0.702 G -67.1 -20.1 158.0 0.702 0.0 HOH
 2.396
 NE
 O
ARG B:269 B:292 156.0 0.693 G -63.2 -14.7 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 152.0 0.676 G -59.9 -35.0 152.0 0.676 0.0 HOH
 2.946
 O
 O
ARG B:269 B:292 146.0 0.649 G -65.4 -24.9 NA NA NA
ARG C:269 C:292 228.0 1.0 T -66.0 -46.9 NA NA NA
ARG D:269 D:292 156.0 0.693 G -66.9 -26.4 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ARG A:269 A:292 163.0 0.724 G -70.5 -13.8 163.0 0.724 0.0 HOH
 4.160
 NH2
 O
ARG B:269 B:292 162.0 0.72 S -61.5 -41.0 162.0 0.72 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:266 A:292 176.0 0.782 T 66.3 -23.5 176.0 0.782 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:267 A:292 139.0 0.618 G -51.1 -34.3 139.0 0.618 0.0 ACY
ACY
HOH
 2.854
9.316
2.848
 NE
NH2
N
 O
OXT
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 160.0 0.711 G -61.3 -37.9 160.0 0.711 0.0 HOH
 2.992
 O
 O
ARG B:269 B:292 150.0 0.667 G -64.6 -32.8 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 174.0 0.773 T -73.8 -24.0 174.0 0.773 0.0
ARG B:269 B:292 157.0 0.698 G -66.1 -25.4 108.0 0.48 0.218 A:Q99PI8:0.218
 HOH
 2.730
 NH1
 O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 149.0 0.662 G -66.3 -21.7 149.0 0.662 0.0 HOH
 1.815
 HE
 O
ARG B:269 B:292 166.0 0.738 G -54.8 -33.3 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 208.0 0.924 G -64.5 -42.3 208.0 0.924 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:269 A:292 164.0 0.729 G -64.4 -20.4 164.0 0.729 0.0 CL
HOH
 9.323
3.138
 O
CG
 CL
O
ARG B:269 B:292 160.0 0.711 G -65.8 -17.7 160.0 0.711 0.0 CL
CL
HOH
 9.330
3.255
2.720
 O
N
NH1
 CL
CL
O
ARG C:269 C:292 153.0 0.68 G -65.9 -17.1 153.0 0.68 0.0 CL
HOH
 9.082
3.122
 O
NH1
 CL
O
ARG D:269 D:292 133.0 0.591 G -65.2 -11.8 133.0 0.591 0.0 HOH
 3.403
 CG
 O
ARG E:269 E:292 132.0 0.587 G -64.8 -20.4 132.0 0.587 0.0 CL
CL
HOH
 9.352
3.422
3.184
 O
CG
NH1
 CL
CL
O
ARG F:269 F:292 155.0 0.689 G -69.6 -17.3 155.0 0.689 0.0 CL
HOH
 9.307
2.501
 O
NE
 CL
O
ARG G:269 G:292 160.0 0.711 G -64.6 -11.8 160.0 0.711 0.0 CL
CL
HOH
 3.265
9.514
3.035
 NH2
O
O
 CL
CL
O
ARG H:269 H:292 145.0 0.644 G -65.1 -14.2 145.0 0.644 0.0 CL
HOH
 9.590
3.056
 O
N
 CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:266 A:292 140.0 0.622 G -57.1 -32.5 140.0 0.622 0.0
ARG F:266 D:292 133.0 0.591 T -85.5 -23.6 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ARG A:268 A:292 178.0 0.791 G -64.6 -22.5 178.0 0.791 0.0 HOH
 2.631
 O
 O
ARG B:268 B:292 198.0 0.88 G -62.2 -22.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:292 A:292 139.0 0.618 G -61.8 -20.1