Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229820 . C A CCDS13777.1:NM_023004.5:c.836cGc>cTc_NP_075380.1:p.279R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 251.0 1.0 -94.3 2.2 251.0 1.0 0.0 HOH
 2.901
 NE
 O
ARG B:256 B:279 247.0 1.0 -97.6 -1.2 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 251.0 1.0 -92.9 3.2 251.0 1.0 0.0 HOH
 3.529
 NE
 O
ARG B:256 B:279 239.0 1.0 -75.4 -22.2 NA NA NA
ARG C:256 C:279 245.0 1.0 -94.8 -7.0 NA NA NA
ARG D:256 D:279 249.0 1.0 -92.9 -0.8 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ARG A:256 A:279 250.0 1.0 -92.1 -4.3 250.0 1.0 0.0 HOH
 5.464
 C
 O
ARG B:256 B:279 214.0 0.951 -88.6 -28.1 214.0 0.951 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:253 A:279 247.0 1.0 -89.2 -33.1 247.0 1.0 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:254 A:279 242.0 1.0 -92.6 -5.3 242.0 1.0 0.0 HOH
 2.562
 NH2
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 249.0 1.0 -95.0 -3.3 249.0 1.0 0.0 GOL
GOL
HOH
 9.677
5.361
5.145
 O
C
N
 O2
O1
O
ARG B:256 B:279 245.0 1.0 -93.3 -8.0 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 249.0 1.0 -86.2 1.4 249.0 1.0 0.0 CL
HOH
 9.241
5.386
 C
N
 CL
O
ARG B:256 B:279 249.0 1.0 -93.6 9.7 249.0 1.0 0.0
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 249.0 1.0 -96.5 -4.3 249.0 1.0 0.0 HOH
 1.952
 HH22
 O
ARG B:256 B:279 245.0 1.0 -98.2 -4.4 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 250.0 1.0 -84.0 -36.0 250.0 1.0 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:256 A:279 237.0 1.0 -88.4 -15.1 75.0 0.333 0.667 H:Q99PI8:0.476
D:Q99PI8:0.236
B:Q99PI8:0.142
 GOL
CL
GOL
CL
HOH
 5.628
2.973
9.684
6.718
2.241
 N
N
NH1
NE
NH1
 O2
CL
C3
CL
O
ARG B:256 B:279 239.0 1.0 -94.1 -10.1 90.0 0.4 0.6 H:Q99PI8:0.2
D:Q99PI8:0.453
A:Q99PI8:0.133
 GOL
CL
GOL
CL
HOH
 9.256
8.368
5.414
4.494
3.048
 NH1
NE
N
NH1
N
 O3
CL
C1
CL
O
ARG C:256 C:279 241.0 1.0 -105.0 4.1 90.0 0.4 0.6 F:Q99PI8:0.018
G:Q99PI8:0.529
E:Q99PI8:0.16
 CL
CL
HOH
 3.144
5.991
3.824
 N
N
NH1
 CL
CL
O
ARG D:256 D:279 238.0 1.0 -92.9 -4.4 80.0 0.356 0.644 A:Q99PI8:0.529
H:Q99PI8:0.036
B:Q99PI8:0.209
 GOL
CL
CL
HOH
 4.160
3.576
3.035
3.149
 NH1
NH1
N
O
 O3
CL
CL
O
ARG E:256 E:279 239.0 1.0 -90.5 -11.1 80.0 0.356 0.644 C:Q99PI8:0.52
F:Q99PI8:0.182
G:Q99PI8:0.102
 CL
CL
HOH
 2.875
5.134
2.974
 NH1
NH1
N
 CL
CL
O
ARG F:256 F:279 242.0 1.0 -100.1 -2.8 101.0 0.449 0.551 C:Q99PI8:0.018
E:Q99PI8:0.484
G:Q99PI8:0.164
 CL
HOH
 8.928
3.105
 CZ
N
 CL
O
ARG G:256 G:279 243.0 1.0 -98.1 -4.0 90.0 0.4 0.6 C:Q99PI8:0.231
F:Q99PI8:0.44
E:Q99PI8:0.102
 CL
HOH
 7.398
2.586
 NH1
O
 CL
O
ARG H:256 H:279 226.0 1.0 -94.3 -6.9 92.0 0.409 0.591 A:Q99PI8:0.196
D:Q99PI8:0.036
B:Q99PI8:0.444
 GOL
CL
GOL
CL
HOH
 9.503
6.843
4.552
9.146
2.327
 NH1
NH1
NH2
CD
NH1
 O2
CL
C3
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:253 A:279 105.0 NA -96.6 50.0 105.0 NA NA
ARG F:253 D:279 252.0 1.0 -94.0 37.5 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ARG A:255 A:279 230.0 1.0 -94.3 -4.1 205.0 0.911 0.089 C:Q3UHD1:0.111
 MAN
MAN
HOH
 6.641
9.101
2.868
 O
NH1
N
 O2
O3
O
ARG B:255 B:279 209.0 0.929 -95.0 -9.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:279 A:279 248.0 1.0 -93.2 -5.3